ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.13.1

Subclass Accession number: 7364
Subclass: 4.13.1

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 9.0 +/- 11.8
Average RMSD (Å) : 0.956 +/- 0.357

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	hXhchpXX
(φψ)-conformation:	bbplppaa

Pattern:	x	[AILY]	x	x	[DGNS]	[ALMPV]	[dehnpst]	x	[adgptv]	x	x	x
Conservation:	-1.000	1.461	-1.023	-0.398	2.065	0.583	-0.256	-1.155	-0.475	0.087	-0.320	-0.568

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ayl_*_23	1ayl	-	23	33	.IVYNPSYDLLY	.EEES--HHHHH	.bbxlxxaaaaa
1cvr_A_181	1cvr	A	185	196	CYDPGVTPKNII	EESSS--HHHHH	bbxwvxbaaaaa
1g8p_A_106	1g8p	A	108	119	DLPLGVSEDRVV	EE-TT--HHHHH	xbwxvxxaaaaa
1ic6_A_2	1ic6	A	2	12	.AQTNAPWGLAR	.EETT--HHHHH	.bbxlxwaaaaa
1ii2_A_4	1ii2	A	4	15	TIHRNLLSPELV	EEEES--HHHHH	xxbblxxaaaaa
1kvk_A_339	1kvk	A	343	354	LLKPGLERAKVE	EE-TT--HHHHH	xbxxgxxaaaaa
1pkg_A_618	1pkg	A	624	635	MLKPSAHLTERE	EE-TT--HHHHH	bpxxlxxaaaaa
1req_B_616	1req	B	616	627	RLFMGMDVVDTL	EE-TT--HHHHH	bbbxvpxaaaaa
1udn_A_170	1udn	A	170	181	RILLDLNFEEDS	EEEES--HHHHH	bxbblxxaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ic6_A_2	1ic6	A	CACALCIUM ION	R - 12
1pkg_A_618	1pkg	A	ADPADENOSINE-5'-DIPHOSPHATE	A - 621
1pkg_A_618	1pkg	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 623
1pkg_A_618	1pkg	A	ADPADENOSINE-5'-DIPHOSPHATE	K - 626
1pkg_A_618	1pkg	A	PTRO-PHOSPHOTYROSINE	H - 630
1pkg_A_618	1pkg	A	PTRO-PHOSPHOTYROSINE	T - 632
1pkg_A_618	1pkg	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 640
1udn_A_170	1udn	A	PO4PHOSPHATE ION	L - 175
1udn_A_170	1udn	A	PO4PHOSPHATE ION	D - 180

Clusters included in this Subclass

CLUSTER: EH.4.72

CLUSTER: EH.5.124