Information on SUBCLASS 5.14.2 |
Subclass Accession number: 738
Subclass: 5.14.2 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 23.8 +/- 19.5 Average RMSD (Å) : 0.800 +/- 0.453 Consensus geometry
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Consensus Sequence: | QXGppXXXp |
(φψ)-conformation: | bbeapppbb |
Pattern: | [CGLV] | x | [ALV] | [Q] | [hiv] | [DG] | [ADNS] | [ENY] | [APT] | x | [aqt] | [AET] | x |
Conservation: | -0.902 | -0.686 | 0.190 | 2.554 | -0.562 | 1.445 | 0.039 | 0.069 | 0.072 | -0.545 | -0.626 | -0.022 | -1.026 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1juh_A_283 | 1juh | A | 283 | 295 | VVVQIGDYAATEL | EEEEETTS--EEE | bxbbbeaxxpbxb |
1juh_A_81 | 1juh | A | 84 | 96 | LWAQSGNETQQTR | EEEEETTS--EEE | bbbbbeaxxxbbb |
1mx1_A_1525 | 1mx1 | A | 1525 | 1537 | GYLQIGANTQAAQ | EEEEEESS-EEEE | xbbxbeabbbxbb |
1pz7_A_122 | 1pz7 | A | 123 | 135 | GSLQVGNEAPITG | EEEEETTS--EEE | bbbbbeaxxpxbe |
2fbj_H_199 | 2fbj | H | 202 | 214 | CSVQHDSNPVQEL | EEEEETTS--EEE | bbbbxeaxpxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1juh_A_81 | 1juh | A | NAGN-ACETYL-D-GLUCOSAMINE | Q - 83 |
1juh_A_81 | 1juh | A | NAGN-ACETYL-D-GLUCOSAMINE | W - 85 |
1juh_A_81 | 1juh | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 89 |
1juh_A_81 | 1juh | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 90 |
1juh_A_81 | 1juh | A | NAGN-ACETYL-D-GLUCOSAMINE | V - 97 |
1juh_A_283 | 1juh | A | EDO1,2-ETHANEDIOL | L - 295 |
2fbj_H_199 | 2fbj | H | NAGN-ACETYL-D-GLUCOSAMINE | S - 203 |
2fbj_H_199 | 2fbj | H | NAGN-ACETYL-D-GLUCOSAMINE | V - 204 |
2fbj_H_199 | 2fbj | H | NAGN-ACETYL-D-GLUCOSAMINE | Q - 205 |
2fbj_H_199 | 2fbj | H | NAGN-ACETYL-D-GLUCOSAMINE | V - 211 |
Clusters included in this Subclass |
CLUSTER: HA.4.74 |
CLUSTER: HA.6.123 |