ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.2.4

Subclass Accession number: 7447
Subclass: 5.2.4

PSSM

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 8.8 +/- 11.2
Average RMSD (Å) : 0.720 +/- 0.383

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	hcpppXphX
(φψ)-conformation:	bbaaabpaa

Pattern:	[ILMV]	x	[FIV]	[DGR]	x	[DNRST]	[ehkr]	x	[EGNS]	x	x	[aegs]	[ACIV]	[akv]	[hrw]	x
Conservation:	1.959	-0.702	1.849	0.998	0.157	0.119	-0.429	-0.728	0.632	-0.728	-1.325	-1.026	0.737	-0.400	-0.084	-1.028

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1l4u_A_146	1l4u	A	146	161	MRVDTNRRNPGAVVRH	EEEE-SS--HHHHHHH	bbbxaaaxxaaaaaaa
1m8p_A_544	1m8p	A	544	559	LVVDFSKQSVRSIVHE	EEE-TTTS-HHHHHHH	bbbbaaabxaaaaaaa
1nn4_A_104	1nn4	A	105	120	LAFGSRVVGLELAKMI	EEEETTTS-HHHHHHH	bbbbaaabxaaaaaaa
1qdl_B_27	1qdl	B	29	44	IVIRNDEISIKGIERI	EEEETTTS-HHHHHHH	bbbxaaabxaaaaaaa
1qhx_A_156	1qhx	A	156	171	VEVDTTHKESIECAWA	EEEETTSS-HHHHHHH	bbbbaaabxaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1l4u_A_146	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 150
1l4u_A_146	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	R - 153
1l4u_A_146	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 154
1l4u_A_146	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	P - 155
1l4u_A_146	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 158
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 160
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	T - 161
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 163
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	E - 164
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 165
1qhx_A_156	1qhx	A	ATPADENOSINE-5'-TRIPHOSPHATE	C - 168

Clusters included in this Subclass

CLUSTER: EH.4.140

CLUSTER: EH.5.104