Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 5.21.1

Subclass Accession number: 745 Subclass: 5.21.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 5 Average sequence ID (%) : 18.6 +/- 18.1 Average RMSD (Å) : 1.000 +/- 0.187 Consensus geometry d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b9m_A_146	1b9m	A	146	159	HVDVLLADGKTRLK	EEEEEETTS--EEE	bbbbbxaavaxxbb
1eej_A_35	1eej	A	35	48	GVLYITDDGKHIIQ	EEEEEETTS--EEE	exbbbxaavabbbx
1osp_O_96	1osp	O	98	111	TLEVFKEDGKTLVS	EEEEE-TTSSSEEE	bbbbbxaalaxxab
1uyp_A_102	1uyp	A	105	118	QCVVMSENGLDFVK	EEEEEESSSS--EE	bbbbbbaavabbbx
1uyp_A_45	1uyp	A	46	59	WGHAVSDDLVHWRH	EEEEEESSSSS-EE	bxbbbbaavaxxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b9m_A_146	1b9m	A	NINICKEL (II) ION	H - 146
1b9m_A_146	1b9m	A	NINICKEL (II) ION	V - 147
1b9m_A_146	1b9m	A	NINICKEL (II) ION	D - 148
1b9m_A_146	1b9m	A	NINICKEL (II) ION	R - 157
1b9m_A_146	1b9m	A	NINICKEL (II) ION	K - 159
1uyp_A_102	1uyp	A	GOLGLYCEROL	E - 103
1uyp_A_102	1uyp	A	CITCITRIC ACID	V - 107
1uyp_A_102	1uyp	A	CITCITRIC ACID	V - 108
1uyp_A_102	1uyp	A	CITCITRIC ACID	M - 109
1uyp_A_102	1uyp	A	CITCITRIC ACID	V - 117
1uyp_A_102	1uyp	A	CITCITRIC ACID	K - 118

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1uyp_A_102	1uyp	A	AC6NA BINDING SITE FOR CHAIN A	M - 109
1uyp_A_102	1uyp	A	AC4CIT BINDING SITE FOR CHAIN A	K - 118

Clusters included in this Subclass

CLUSTER: HA.5.67

For any comment or web-related incidence, send an email to the webmaster.