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Information on SUBCLASS 5.5.1
Subclass Accession number: 7459
Subclass: 5.5.1 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 28.4 +/- 24.1
Average RMSD (Å) : 0.510 +/- 0.133

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXcGhppXX
(φψ)-conformation: bbegpabaa
Pattern: [AIKLMV][CFIKLV][agqst][adegst][gns][GR][AILV][dgknqrs][deknrsty][afglmpvy][aegnqt][dehqst][AFILMV]x[adekst][AIKLM]
Conservation:0.6420.134-0.176-0.4070.8602.7351.202-0.433-0.809-1.336-0.865-0.3080.117-1.086-0.193-0.079
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a53_*_2061a53   -207222KVAESGISERNEIEELEEEES----HHHHHHHbbxbevxabaaaaaaa
1d3g_A_3301d3g   A330345IIGVGGVSSGQDALEKEEEESS--SHHHHHHHbxxbevxabaaaaaaa
1eep_A_2581eep   A259274IIADGGIRFSGDVVKAEEEES---SHHHHHHHbbxbevxabaaaaaaa
1f76_A_2921f76   A292307IIGVGGIDSVIAAREKEEEESS--SHHHHHHHbbxbevxabaaaaaaa
1gox_*_2821gox   -282297VFLDGGVRRGTDVFKAEEEESS--SHHHHHHHbbbbevxabaaaaaaa
1h5y_A_2011h5y   A201216VIASGGAGRVEHFYEAEEEES---SHHHHHHHbxxbMgxabaaaaaaa
1h5y_A_801h5y   A8095VLVGGGVRSLEDATTLEEEESS--SHHHHHHHbbbbMlxabaaaaaaa
1jr1_A_3611jr1   A361376VIADGGIQNVGHIAKAEEEES---SHHHHHHHbbxbevxabaaaaaaa
1jvn_A_4961jvn   A496511VIASSGAGVPEHFEEAEEE-S---SHHHHHHHbxxbMgxabaaaaaaa
1ka9_F_1991ka9   F199214VIASGGAGRMEHFLEAEEEES---SHHHHHHHbbxbMgpNbaaaaaaa
1me8_A_3551me8   A355370VCSDGGIVYDYHMTLAEEEES---SHHHHHHHbbxbevxabaaaaaaa
1mzh_A_2771mzh   A278293VKASGGIRDLETAISMEEEESS--SHHHHHHHbbxbevxabaaaaaaa
1o0y_A_2061o0y   A207222VKASGGIRTFEDAVKMEEEESS--SHHHHHHHbbxbMvxabaaaaaaa
1p0k_A_2531p0k   A254269MIASGGLQDALDVAKAEEEESS--SHHHHHHHbbbbMvxabaaaaaaa
1pii_*_2101pii   -211226VISESGINTYAQVRELEEEES----HHHHHHHbbxbMvxabaaaaaaa
1ps9_A_2831ps9   A283298LVTTNRINDPQVADDIEEE-SS--SHHHHHHHbbbbMlbabaaaaaaa
1qo2_A_1901qo2   A191206VLAAGGISSENSLKTAEEEESS--SHHHHHHHbbxbMvbabaaaaaaa
1qop_A_2081qop   A208223ALQGFGISSPEQVSAAEEEESS--SHHHHHHHxbxbevxNbaaaaaaa
1thf_D_1981thf   D198213IIASGGAGKMEHFLEAEEEES---SHHHHHHHbxxbegpabaaaaaaa
1zfj_A_3391zfj   A340355IIADGGIKYSGDIVKAEEE-S---SHHHHHHHbbxbevxabaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a53_*_2061a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE A - 209
1a53_*_2061a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE E - 210
1a53_*_2061a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE S - 211
1a53_*_2061a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE G - 212
1a53_*_2061a53   *     IGPINDOLE-3-GLYCEROL PHOSPHATE I - 213
1d3g_A_3301d3g   A     FMNFLAVIN MONONUCLEOTIDE V - 333
1d3g_A_3301d3g   A     FMNFLAVIN MONONUCLEOTIDE G - 334
1d3g_A_3301d3g   A     FMNFLAVIN MONONUCLEOTIDE G - 335
1d3g_A_3301d3g   A     FMNFLAVIN MONONUCLEOTIDE V - 336
1d3g_A_3301d3g   A     ACTACETATE ION E - 344
1d3g_A_3301d3g   A     ACTACETATE ION A - 348
1f76_A_2921f76   A     MSESELENOMETHIONINE I - 293
1f76_A_2921f76   A     FMNFLAVIN MONONUCLEOTIDE V - 295
1f76_A_2921f76   A     FMNFLAVIN MONONUCLEOTIDE G - 296
1f76_A_2921f76   A     FMNFLAVIN MONONUCLEOTIDE G - 297
1f76_A_2921f76   A     FMNFLAVIN MONONUCLEOTIDE I - 298
1gox_*_2821gox   *     FMNFLAVIN MONONUCLEOTIDE D - 285
1gox_*_2821gox   *     FMNFLAVIN MONONUCLEOTIDE G - 286
1gox_*_2821gox   *     FMNFLAVIN MONONUCLEOTIDE G - 287
1gox_*_2821gox   *     FMNFLAVIN MONONUCLEOTIDE V - 288
1gox_*_2821gox   *     FMNFLAVIN MONONUCLEOTIDE R - 289
1h5y_A_801h5y   A     PO4PHOSPHATE ION G - 83
1h5y_A_801h5y   A     GOLGLYCEROL G - 83
1h5y_A_801h5y   A     PO4PHOSPHATE ION G - 84
1h5y_A_801h5y   A     GOLGLYCEROL G - 84
1h5y_A_801h5y   A     PO4PHOSPHATE ION G - 85
1h5y_A_801h5y   A     PO4PHOSPHATE ION V - 86
1h5y_A_801h5y   A     PO4PHOSPHATE ION R - 87
1h5y_A_2011h5y   A     PO4PHOSPHATE ION S - 204
1h5y_A_2011h5y   A     GOLGLYCEROL S - 204
1h5y_A_2011h5y   A     PO4PHOSPHATE ION G - 205
1h5y_A_2011h5y   A     PO4PHOSPHATE ION G - 206
1h5y_A_2011h5y   A     PO4PHOSPHATE ION A - 207
1jr1_A_3611jr1   A     IMPINOSINIC ACID D - 364
1jr1_A_3611jr1   A     MOAMYCOPHENOLIC ACID D - 364
1jr1_A_3611jr1   A     IMPINOSINIC ACID G - 365
1jr1_A_3611jr1   A     IMPINOSINIC ACID G - 366
1jr1_A_3611jr1   A     IMPINOSINIC ACID I - 367
1jr1_A_3611jr1   A     IMPINOSINIC ACID Q - 368
1me8_A_3551me8   A     RVPRIBAVIRIN MONOPHOSPHATE D - 358
1me8_A_3551me8   A     RVPRIBAVIRIN MONOPHOSPHATE G - 359
1me8_A_3551me8   A     RVPRIBAVIRIN MONOPHOSPHATE G - 360
1me8_A_3551me8   A     RVPRIBAVIRIN MONOPHOSPHATE I - 361
1p0k_A_2531p0k   A     PO4PHOSPHATE ION S - 257
1p0k_A_2531p0k   A     PO4PHOSPHATE ION G - 258
1p0k_A_2531p0k   A     PO4PHOSPHATE ION G - 259
1p0k_A_2531p0k   A     PO4PHOSPHATE ION L - 260
1pii_*_2101pii   *     PO4PHOSPHATE ION E - 214
1pii_*_2101pii   *     PO4PHOSPHATE ION S - 215
1pii_*_2101pii   *     PO4PHOSPHATE ION G - 216
1pii_*_2101pii   *     PO4PHOSPHATE ION I - 217
1pii_*_2101pii   *     PO4PHOSPHATE ION N - 218
1ps9_A_2831ps9   A     FMNFLAVIN MONONUCLEOTIDE T - 286
1ps9_A_2831ps9   A     FMNFLAVIN MONONUCLEOTIDE N - 287
1ps9_A_2831ps9   A     FMNFLAVIN MONONUCLEOTIDE R - 288
1ps9_A_2831ps9   A     FMNFLAVIN MONONUCLEOTIDE I - 289
1qo2_A_1901qo2   A     MSESELENOMETHIONINE S - 202
1qo2_A_1901qo2   A     MSESELENOMETHIONINE L - 203
1qo2_A_1901qo2   A     MSESELENOMETHIONINE K - 204
1qo2_A_1901qo2   A     MSESELENOMETHIONINE A - 206
1qo2_A_1901qo2   A     MSESELENOMETHIONINE Q - 207
1qo2_A_1901qo2   A     MSESELENOMETHIONINE K - 208
1qo2_A_1901qo2   A     MSESELENOMETHIONINE H - 210
1qop_A_2081qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE G - 211
1qop_A_2081qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE F - 212
1qop_A_2081qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE G - 213
1qop_A_2081qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE I - 214
1thf_D_1981thf   D     PO4PHOSPHATE ION S - 201
1thf_D_1981thf   D     PO4PHOSPHATE ION G - 202
1thf_D_1981thf   D     PO4PHOSPHATE ION G - 203
1thf_D_1981thf   D     PO4PHOSPHATE ION A - 204
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h5y_A_801h5y   A AC1PO4 BINDING SITE FOR RESIDUE A301G - 84
1qop_A_2081qop   A IPLSUBSTRATE ANALOG BOUND TO THE ALPHA ACTIVE SITE.G - 213

Clusters included in this Subclass
CLUSTER: EH.5.9
CLUSTER: EH.7.135