Logo
Information on SUBCLASS 5.13.1
Subclass Accession number: 7471
Subclass: 5.13.1 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 8.9 +/- 11.2
Average RMSD (Å) : 0.983 +/- 0.354

Consensus geometry
d (Å): 15 delta (°): 0-45 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hXXphXpXp
(φψ)-conformation: bbpppabaa
Pattern: xx[aipvy][aers][fkl][dhny][fgpv][ADGRT][DNST]x[EKQT][DERST][AILT][filv][aes]
Conservation:-1.000-0.404-1.006-0.512-0.221-0.302-1.808-0.4601.533-0.8141.8300.5560.9780.0710.560
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dbt_A_71dbt   A720.IIALDFASAEETLA.EEE---SSHHHHHH.xxxxxbabaaaaaa
1dqw_A_321dqw   A3246LCASLDVRTTKELLEEEEE---SSHHHHHHxbxbbxxabaaaaaa
1i7q_A_91i7q   A1226KVQASYRGDPTTLFHEEEE---S-HHHHHHbbpbxxbabaaaaaa
1ift_*_891ift   -89103SAYFFHPDNQEDAEAEEEE---SSHHHHHHbbbbxpxabaaaaaa
1nb0_A_1011nb0   A110124LRPEKNFDSLESLISEE-----SSHHHHHHabwxbxbabaaaaaa
1vgv_A_3221vgv   A322334..VRLVGTDKQRIVE..EE---SSHHHHHH..bbxxxaxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dbt_A_71dbt   A     U5PURIDINE-5'-MONOPHOSPHATE A - 9
1dbt_A_71dbt   A     U5PURIDINE-5'-MONOPHOSPHATE D - 11
1vgv_A_3221vgv   A     MSESELENOMETHIONINE V - 322
1vgv_A_3221vgv   A     MSESELENOMETHIONINE R - 323
1vgv_A_3221vgv   A     MSESELENOMETHIONINE L - 324
1vgv_A_3221vgv   A     MSESELENOMETHIONINE V - 325
1vgv_A_3221vgv   A     MSESELENOMETHIONINE G - 326
1vgv_A_3221vgv   A     MSESELENOMETHIONINE T - 327
1vgv_A_3221vgv   A     MSESELENOMETHIONINE I - 332
1vgv_A_3221vgv   A     MSESELENOMETHIONINE L - 339

Clusters included in this Subclass
CLUSTER: EH.6.48