Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 5.23.1

Subclass Accession number: 7484 Subclass: 5.23.1 Type: EH beta-alpha DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 3 Average sequence ID (%) : 7.7 +/- 10.8 Average RMSD (Å) : 1.233 +/- 0.404 Consensus geometry d (Å): 17 delta (°): 45-90 theta (°): 90-135 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1lc0_A_144	1lc0	A	149	161	LRFTASPLEEERF	EEEEES---HHHH	bbbbbxpbpaaaa
1nd7_A_893	1nd7	A	893	905	RLDLPPYKSYEQL	EEE----SSHHHH	bbxbwwxabaaaa
1o7q_A_182	1o7q	A	186	198	VFKIKPEKRWQDI	EEE----SSHHHH	bbxbxxxaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lc0_A_144	1lc0	A	PO4PHOSPHATE ION	F - 161
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	E - 192
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 194
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	W - 195
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	Q - 196
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	D - 197
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	I - 198
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	S - 199
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 200
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	M - 201
1o7q_A_182	1o7q	A	MNMANGANESE (II) ION	R - 202
1o7q_A_182	1o7q	A	UDPURIDINE-5'-DIPHOSPHATE	R - 202

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7q_A_182	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	R - 194
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	W - 195
1o7q_A_182	1o7q	A	AC7UDP BINDING SITE FOR CHAIN A	D - 197
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	I - 198
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	S - 199
1o7q_A_182	1o7q	A	AC6UDP BINDING SITE FOR CHAIN A	R - 202

Clusters included in this Subclass

CLUSTER: EH.5.183

For any comment or web-related incidence, send an email to the webmaster.