Information on SUBCLASS 4.2.1 |
Subclass Accession number: 75
Subclass: 4.2.1 Type: HA beta-beta hairpin DB: ArchDB-KI |
Number of loops: 24 Average sequence ID (%) : 12.3 +/- 1.4 Average RMSD (Å) : 1.51 +/- 0.67 Consensus geometry
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Consensus Sequence: | XXXXphpX |
(φψ)-conformation: | bbpaalbb |
Pattern: | x | x | x | x | {DENRSTY} | {FGLY} | {DEHKNQRST} | x | x | x | x |
Conservation: | -1.018 | -1.657 | -0.373 | -0.463 | 1.065 | 1.621 | -0.197 | -0.348 | 0.653 | 0.718 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b7b_A_193 | 1b7b | A | 195 | 202 | VVGQELKG... | EETTTTEE... | bbeaavxx... |
1bi8_A_151 | 1bi8 | A | 152 | 161 | LVTSSGQIKL. | EE-SS--EEE. | xbxaagxbbx. |
1dku_A_35 | 1dku | A | 38 | 48 | TRFSDGEVQIN | EE-TTS-EEEE | bbxaagxxbbb |
1e4y_A_123 | 1e4y | A | 125 | 134 | VHAPSGRVYH. | EEGGGTEEEE. | bxaaavxbbb. |
1esm_D_175 | 1esm | D | 175 | 182 | YSHLIYDV... | EETTTTEE... | bbaaalbx... |
1f3m_D_269 | 1f3m | D | 277 | 287 | GQGASGTVYTA | EEETTEEEEEE | bbbaaebbbxb |
1f3m_D_395 | 1f3m | D | 396 | 405 | LLGMDGSVKL. | EE-TT--EEE. | xbxaavpbbx. |
1fot_A_100 | 1fot | A | 105 | 115 | RSRHNGRYYAM | EETTT--EEEE | bxaaalxbbbx |
1fot_A_216 | 1fot | A | 217 | 226 | LLDKNGHIKI. | EE-TTS-EEE. | bbxaavxxbx. |
1g3n_A_151 | 1g3n | A | 152 | 161 | LVTSSGQIKL. | EE-TT--EEE. | xbxaagxxbx. |
1g99_A_2 | 1g99 | A | 7 | 17 | NAGSSSLKYQL | EE-SS-EEEEE | bbbaabbxbbb |
1gc5_A_424 | 1gc5 | A | 425 | 435 | IDMVDRQLAFV | EE-SS-EEEEE | bxbaabbbbbb |
1how_A_230 | 1how | A | 234 | 244 | HKGPNGVHVVM | EE-SS-EEEEE | bxbaaexbxbb |
1ia8_A_136 | 1ia8 | A | 137 | 146 | LLDERDNLKI. | EE-TT--EEE. | xbxaavxxbx. |
1iep_A_256 | 1iep | A | 260 | 270 | VWKKYSLTVAV | EEGGGTEEEEE | bxaaalbxbbb |
1j7l_A_30 | 1j7l | A | 34 | 44 | LVGENENLYLK | EE-SS-EEEEE | bxbaabbbbbb |
1jvp_P_133 | 1jvp | P | 134 | 143 | LINTEGAIKL. | EE-TTS-EEE. | bbbaavxbbx. |
1jxh_A_188 | 1jxh | A | 189 | 197 | LFTREGEQR.. | EE-SS-EEE.. | bbbaaebbx.. |
1k3a_A_1111 | 1k3a | A | 1112 | 1121 | MVAEDFTVKI. | EE-TT--EEE. | bbxaavxxbx. |
1qhx_A_54 | 1qhx | A | 55 | 64 | EFDADGGVSI. | EE-TTS-EEE. | bxxaavxbbb. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e4y_A_123 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 123 |
1e4y_A_123 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | R - 124 |
1e4y_A_123 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | V - 132 |
1e4y_A_123 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Y - 133 |
1e4y_A_123 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | H - 134 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4y_A_123 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | R - 123 |
1e4y_A_123 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | Y - 133 |
1e4y_A_123 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | H - 134 |
Bibliographic annotations |
Clusters included in this Subclass |
CLUSTER: HA.3.7 |
CLUSTER: HA.4.6 |
CLUSTER: HA.5.2 |
CLUSTER: HA.6.3 |