Information on SUBCLASS 5.30.1 |
Subclass Accession number: 754
Subclass: 5.30.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.2 (>75 %) 3.2.1 (>75 %) 3.2.1.113 GO : GO:0004553 (>75 %) GO:0005509 (>75 %) GO:0015923 (>75 %) GO:0016798 (>75 %) SCOP : 48207 (>75 %) 48225 (>75 %) 48226 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 20.0 +/- 18.1 Average RMSD (Å) : 0.667 +/- 0.153 Consensus geometry
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Consensus Sequence: | XphGXXGXX |
(φψ)-conformation: | bbaeaaebb |
Pattern: | [KTW] | x | [LPW] | x | [DET] | [FL] | [G] | [EPS] | x | [G] | [SV] | x | x | [SY] | x |
Conservation: | -0.352 | -0.530 | -0.649 | -0.352 | 0.063 | 0.400 | 2.318 | -0.174 | -0.945 | 2.318 | -0.245 | -0.767 | -0.471 | -0.025 | -0.589 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gd7_A_31 | 1gd7 | A | 32 | 46 | KLWVDLGPLGVKQSS | EEEEE-GGG-EEEEE | xbbbxaeaaexbxbb |
1mhm_A_313 | 1mhm | A | 318 | 332 | WSPEEFGEGGSIVYQ | EEEEE-GGG-EEEEE | bbwbbaeaaebbbbb |
1rkd_*_219 | 1rkd | - | 219 | 233 | TVLITLGSRGVWASV | EEEEE-GGG-EEEEE | bbbxxaeaaebxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | T - 223 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | L - 224 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | G - 225 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | S - 226 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | G - 228 |
1rkd_*_219 | 1rkd | * | ADPADENOSINE-5'-DIPHOSPHATE | V - 229 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1rkd_*_219 | 1rkd | * | AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP. | T - 223 |
1rkd_*_219 | 1rkd | * | AB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH ADP. | G - 225 |
Clusters included in this Subclass |
CLUSTER: HA.4.151 |