Logo
Information on SUBCLASS 2.2.3
Subclass Accession number: 7737
Subclass: 2.2.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 82

Average sequence ID (%) : 9.6 +/- 13.3
Average RMSD (Å) : 0.404 +/- 0.161

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXXpXX
(φψ)-conformation: bbaabb
Pattern: xxx[acdgnst][dehknpqrst][dehknqrsty]x[acfgiklmtv]x
Conservation:0.360-1.503-1.3000.3331.2210.743-1.0100.7750.383
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a41_*_1531a41   -153161IEISPDEIVEEEETTEEExpbbaabbb
1a6f_*_241a6f   -2533SVANRQFVLEEE-SSEEEbbbbaabbb
1a6q_*_1291a6q   -132140VLISPQHTYEEE-SSEEEbbbbaabbb
1a7t_A_51a7t   A513VKISDDISIEE-SSSEEEbxabaabbb
1ao0_A_1561ao0   A161169LIMTETEMIEEE-SSEEEbbbbaabbb
1apm_E_1061apm   E109117SFKDNSNLYEEE-SSEEEbbbbaabbb
1apm_E_431apm   E4957LGTGSFGRVEEE-SSEEEabbbaabbb
1boo_A_231boo   A2330.YTTSNGSM.EE-SSEEE.bbbaabbb
1bqy_A_391bqy   A4553TLINQDWVVEE-SSSEEEbxabaabbb
1btk_A_251btk   A3038FLLTVHKLSEEE-SSEEEbbbbaabbb
1bu6_O_51bu6   O917LDQGTTSSREEE-SSEEExbxxaabbb
1cer_O_571cer   O5765VAYDDQYLYEEE-SSEEEbbbbaabbb
1dii_A_4261dii   A428436FIVAPRDMHEEE-SSEEEbbxbaabbb
1dl5_A_2571dl5   A259267YYAGPNGVVEEE-SSEEEbxxxaabbb
1dle_A_401dle   A4553AVVSEYFVLEE-SSSEEEbxabaabbx
1dmu_A_1801dmu   A181189TIQGPRSSQEEE-SS-EEbxbbaabbb
1dym_A_1971dym   A201209WEANSRASHEEE-SS-EEbbbbaabbb
1dyp_A_2191dyp   A223231VNVTKDKITEEE-SSEEEbbbbaabbb
1edz_A_2031edz   A205213YSVDVNNIQEEE-SSEEExxbbaabbb
1ejd_A_2721ejd   A273281IETGEDWISEEE-SSEEEbbbbaabbb
1ex4_A_2361ex4   A242250LWKGEGAVVEEE-SSEEEabbbaabbb
1f7l_A_951f7l   A103111ITHTKEYAAEEE-SSEEEbbbbaabbb
1fit_*_151fit   -1624FLKTELSFAEEE-SSEEEabbbaabbb
1fot_A_1501fot   A153161TFQDAQQIFEEE-SSEEEbebbaabxb
1fth_A_10981fth   A11031111ISHTDQFVTEEE-SSEEEbbbbaabbb
1g6s_A_2861g6s   A287295ICWGDDYISEEE-SSEEEbbbbaabbb
1g6s_A_3581g6s   A359367VEEGHDYIREEE-SSEEEbbxxaabbb
1g86_A_891g86   A93101ISVLPDKYQEEE-SSEEEbbxxaabxb
1gcy_A_3721gcy   A375383TVSGSQQTLEEE-SS-EEbbxxaabbb
1gkz_A_2681gkz   A272280IANNDVDLIEEE-SSEEEbbbbaabbb
1gzk_A_2151gzk   A218226AFQTHDRLCEEE-SSEEEbbbxaabbb
1h1w_A_1451h1w   A148156TFQDDEKLYEEE-SSEEEbbbbaabbb
1h26_C_661h26   C6977VIHTENKLYEEE-SSEEEbbbxaabbb
1h8e_H_161h8e   H1927TFASPTQVFEEE-SS-EEbbbbaabba
1hdg_O_571hdg   O5765VEYTENSLIEEE-SSEEEbbbbaabbb
1i1q_A_2921i1q   A295303FMQDNDFTLEEE-SS-EEbbbxaabbb
1i1q_A_3831i1q   A390398VDRYSYVMHEEE-SSEEEbbbbaabbb
1i82_A_401i82   A4553VLWDENYLYEEE-SSEEEbbbbaabbb
1ig8_A_791ig8   A8593IDLGGTNLREEE-SSEEEbbxxaabxb
1iru_J_101iru   J1321AMKGKNCVAEEE-SSEEEbbbbaabbb
1j0h_A_601j0h   A6270TGSDELFDYEEE-SSEEEaebbaabbb
1j79_A_3251j79   A325332.IALTDDTL.EE-SSSEE.bxbaabbb
1ji1_A_5671ji1   A571579GRFDNVNRIEEE-SS-EEbbbbaabbb
1ji2_A_581ji2   A6068AGSDERFDYEEE-SSEEEaebbaabbb
1jks_A_791jks   A8290VYENKTDVIEEE-SSEEEbbbbaabbb
1jln_A_4071jln   A414422VTECDNYTIEEE-SSEEEbbxbaabbb
1jm6_A_12651jm6   A12691277VALGEEDLSEEE-SSEEEbbbbaabbb
1jz7_A_7391jz7   A740748LTTSEMDFCEEE-SSEEEbbbbaabbb
1jz7_A_8191jz7   A827835ADTLADAVLEEE-SSEEEbbbxaabbb
1k1x_A_4001k1x   A402410MVENDGFIAEEE-SSEEEbbbbaabbb
1k32_A_5851k32   A588596IIPLESSILEEE-SSEEEbbwbaabbx
1k3x_A_891k3x   A92100KLQTADKTIEEE-SSEEEbbbbaabbb
1kuu_A_1121kuu   A115123AAINGSEAFEEE-SS-EEbbbbaabbb
1l8k_A_1411l8k   A148156EDVKSYYTVEEE-SSEEEbbxxaabbb
1lar_A_14491lar   A14561464TVELATYTVEEE-SSEEEbbxbaabbb
1lar_A_17381lar   A17451753EYNMPQYILEEE-SSEEEbbxbaabbb
1lwy_A_621lwy   A6674LTQTEEQLHEEE-SSEEEbbbbaabbx
1mq4_A_1961mq4   A199207YFHDATRVYEEE-SSEEEbbbbaabbb
1mu2_A_2321mu2   A232240YELWPTKWKEEE-SSEEEbbxxaabbb
1mve_A_1011mve   A103111LEWTPNYVREEE-SSEEEbbbbaabbb
1nz0_A_251nz0   A2634SLQNEYFVVEEE-SSEEEbbbbaabbb
1o6y_A_111o6y   A1725LGFGGMSEVEEE-SSEEEabbbaabbb
1o7d_D_6061o7d   D606614VIQNEYLRAEEE-SSEEEbbbbaabbb
1o9l_A_4681o9l   A468476RIITEKAVFEEE-SSEEEbbbbaabbb
1omw_A_2571omw   A260268AFHTPDKLSEEE-SSEEEbbbbaabxx
1pfq_A_4041pfq   A408416EALTSDYLYEEE-SSEEEabbbaabbb
1pkg_A_5891pkg   A595603LGAGAFGKVEEE-SSEEEaebbaabbb
1psd_A_3641psd   A370378LQTSAQMGYEEE-SSEEEbbbxaabbb
1pvd_A_3051pvd   A307315VEFHSDHMKEEEETTEEEbbxbaabbb
1q8y_A_1581q8y   A164172LGWGHFSTVEEE-SSEEEabbbaabbb
1qhw_A_2931qhw   A297305VEIGSKEMSEEE-SSEEEbbbbaabbb
1ryp_A_421ryp   A4452AVRGKDCTVEEE-SSEEEbbbxaabbb
1ryp_F_351ryp   F3745GLRSNTHAVEEE-SSEEEbbbbaabbb
1ryp_G_361ryp   G3846GIKCNDGVVEEEETTEEEbbxbaabbb
1ryp_I_31ryp   I513GVKFNNGVVEEEETTEEEbbxbaabbb
1uet_A_3151uet   A320328FKASEEFCYEEE-SSEEEbbbbaabbb
1umw_A_5111umw   A514522WFRTRSAIIEEE-SSEEEbbbbaabbb
1uxy_*_701uxy   -7280IHDEPDAWYEEE-SSEEEbbxbaabxb
1yfo_A_3561yfo   A363371VTVLVDYTVEEE-SSEEEbbxbaabbb
2bat_*_1152bat   -122130VSCDPVKCYEEE-SS-EEbbbxaabxb
2ovw_A_1972ovw   A201209WEANSRATHEEE-SS-EEbbbbaabbb
2shp_A_3832shp   A390398ESAAHDYTLEEE-SSEEEbbxbaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1apm_E_1061apm   E     PHOPHEOPHYTIN A S - 114
1bqy_A_391bqy   A     ARMDEOXY-METHYL-ARGININE L - 41
1bqy_A_391bqy   A     ARMDEOXY-METHYL-ARGININE C - 42
1bu6_O_51bu6   O     GOLGLYCEROL T - 13
1dii_A_4261dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 427
1dii_A_4261dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 429
1dii_A_4261dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 440
1dyp_A_2191dyp   A     MSESELENOMETHIONINE V - 223
1dyp_A_2191dyp   A     MSESELENOMETHIONINE V - 225
1dyp_A_2191dyp   A     CDCADMIUM ION K - 229
1ejd_A_2721ejd   A     PO4PHOSPHATE ION E - 274
1ejd_A_2721ejd   A     HAICYCLOHEXYLAMMONIUM ION E - 274
1ejd_A_2721ejd   A     PO4PHOSPHATE ION T - 275
1ejd_A_2721ejd   A     PO4PHOSPHATE ION G - 276
1ejd_A_2721ejd   A     PO4PHOSPHATE ION D - 278
1ejd_A_2721ejd   A     HAICYCLOHEXYLAMMONIUM ION D - 278
1ejd_A_2721ejd   A     PO4PHOSPHATE ION W - 279
1ejd_A_2721ejd   A     HAICYCLOHEXYLAMMONIUM ION W - 279
1ejd_A_2721ejd   A     HAICYCLOHEXYLAMMONIUM ION S - 281
1ex4_A_2361ex4   A     CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE L - 241
1ex4_A_2361ex4   A     CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE L - 242
1ex4_A_2361ex4   A     CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE W - 243
1ex4_A_2361ex4   A     CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE V - 250
1f7l_A_951f7l   A     COACOENZYME A S - 102
1f7l_A_951f7l   A     COACOENZYME A I - 103
1f7l_A_951f7l   A     COACOENZYME A T - 104
1f7l_A_951f7l   A     COACOENZYME A H - 105
1f7l_A_951f7l   A     COACOENZYME A T - 106
1f7l_A_951f7l   A     CACALCIUM ION K - 107
1f7l_A_951f7l   A     CACALCIUM ION E - 108
1f7l_A_951f7l   A     CACALCIUM ION Y - 109
1fit_*_151fit   *     MSESELENOMETHIONINE V - 26
1g6s_A_3581g6s   A     FMTFORMIC ACID H - 363
1g6s_A_3581g6s   A     FMTFORMIC ACID D - 364
1h1w_A_1451h1w   A     GOLGLYCEROL Y - 146
1h1w_A_1451h1w   A     GOLGLYCEROL D - 151
1h1w_A_1451h1w   A     GOLGLYCEROL K - 154
1h1w_A_1451h1w   A     GOLGLYCEROL Y - 156
1h1w_A_1451h1w   A     GOLGLYCEROL L - 159
1h1w_A_1451h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 159
1i1q_A_2921i1q   A     TRPTRYPTOPHAN Y - 292
1i1q_A_2921i1q   A     TRPTRYPTOPHAN M - 293
1i1q_A_2921i1q   A     TRPTRYPTOPHAN F - 294
1jm6_A_12651jm6   A     ADPADENOSINE-5'-DIPHOSPHATE D - 1282
1k1x_A_4001k1x   A     CACALCIUM ION E - 400
1k1x_A_4001k1x   A     CACALCIUM ION K - 413
1mq4_A_1961mq4   A     ADPADENOSINE-5'-DIPHOSPHATE L - 210
1mve_A_1011mve   A     MSESELENOMETHIONINE Y - 101
1mve_A_1011mve   A     CACALCIUM ION Y - 101
1mve_A_1011mve   A     MSESELENOMETHIONINE G - 102
1mve_A_1011mve   A     MSESELENOMETHIONINE L - 103
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER L - 17
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 18
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER F - 19
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 20
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 21
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER M - 22
1o6y_A_111o6y   A     MGMAGNESIUM ION M - 22
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER S - 23
1o6y_A_111o6y   A     MGMAGNESIUM ION S - 23
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER E - 24
1o6y_A_111o6y   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER V - 25
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE L - 595
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE G - 596
1pkg_A_5891pkg   A     PTRO-PHOSPHOTYROSINE A - 597
1pkg_A_5891pkg   A     MGMAGNESIUM ION A - 597
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE A - 597
1pkg_A_5891pkg   A     PTRO-PHOSPHOTYROSINE G - 598
1pkg_A_5891pkg   A     MGMAGNESIUM ION G - 598
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE G - 598
1pkg_A_5891pkg   A     PTRO-PHOSPHOTYROSINE A - 599
1pkg_A_5891pkg   A     MGMAGNESIUM ION A - 599
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE A - 599
1pkg_A_5891pkg   A     PTRO-PHOSPHOTYROSINE F - 600
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE F - 600
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE G - 601
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE K - 602
1pkg_A_5891pkg   A     ADPADENOSINE-5'-DIPHOSPHATE V - 603
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE L - 164
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE G - 165
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE W - 166
1q8y_A_1581q8y   A     MGMAGNESIUM ION G - 167
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE G - 167
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE H - 168
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE F - 169
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE S - 170
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE T - 171
1q8y_A_1581q8y   A     ADPADENOSINE-5'-DIPHOSPHATE V - 172
1uet_A_3151uet   A     CACALCIUM ION F - 320
2bat_*_1152bat   *     SIAO-SIALIC ACID R - 118
2bat_*_1152bat   *     SIAO-SIALIC ACID E - 119
2ovw_A_1972ovw   A     CBICELLOBIOSE E - 197
2ovw_A_1972ovw   A     CBICELLOBIOSE D - 199
2ovw_A_1972ovw   A     CBICELLOBIOSE W - 201
2ovw_A_1972ovw   A     CBICELLOBIOSE E - 202
2ovw_A_1972ovw   A     CBICELLOBIOSE A - 211
2ovw_A_1972ovw   A     CBICELLOBIOSE H - 213
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1w_A_1451h1w   A BC2SO4 BINDING SITE FOR CHAIN AY - 146
1h1w_A_1451h1w   A PPBPHOSPHOPEPTIDE BINDING SITET - 148
1h1w_A_1451h1w   A BC1SO4 BINDING SITE FOR CHAIN AF - 149
1h1w_A_1451h1w   A PPBPHOSPHOPEPTIDE BINDING SITEQ - 150
1h1w_A_1451h1w   A AC2GOL BINDING SITE FOR CHAIN AK - 154
1h1w_A_1451h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)L - 155
1h1w_A_1451h1w   A AC2GOL BINDING SITE FOR CHAIN AY - 156
2ovw_A_1972ovw   A CTACATALYTIC RESIDUES.E - 197
2ovw_A_1972ovw   A CTACATALYTIC RESIDUES.E - 202

Clusters included in this Subclass
CLUSTER: HA.2.3
CLUSTER: HA.3.6
CLUSTER: HA.3.75
CLUSTER: HA.4.4