ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.7

Subclass Accession number: 7741
Subclass: 2.2.7

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 18.9 +/- 17.5
Average RMSD (Å) : 0.450 +/- 0.178

Consensus geometry

d (Å): 3

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XpXpGX
(φψ)-conformation:	bbaaeb

Pattern:	[FLPV]	[AFITV]	[gilv]	x	[DGNSTV]	[ehkpqr]	[fkqry]	[DG]	x	[fhilmv]
Conservation:	0.144	0.033	-0.112	-0.845	-0.064	-0.177	-0.345	2.678	-0.834	-0.479

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1evu_A_155	1evu	A	161	170	VAVWTPYGVL	EEEEETTEEE	bbbxbaaebb
1go3_E_84	1go3	E	89	98	VVDVVEFGSF	EEEEETTEEE	xabbbaaebx
1h0h_A_899	1h0h	A	900	909	VILESVRGKL	EEEEETTEEE	bbbbbaaebb
1kqf_A_937	1kqf	A	938	947	VTVSSKRGFI	EEEE-SS-EE	bbbbbaaebb
1lld_A_275	1lld	A	279	288	PTLLNRQGVN	EEEEETTEEE	wbxbbaaebb
1ng4_A_184	1ng4	A	184	193	LFIKTPSGDV	EEEEETTEEE	xbbbbaaebb
1obb_A_389	1obb	A	393	402	PALVDKNGIH	EEEEETTEEE	wbxbbaaexb
1p4k_A_277	1p4k	A	277	286	FAVHDQKGNR	EEEEETTEEE	bbbbbaaebb
1r0p_A_1076	1r0p	A	1083	1092	VIGRGHFGCV	EEEEETTEEE	xabbbaaebb
2nap_A_660	2nap	A	661	670	VIVETRRDAM	EEEEETTEEE	bxxbbaaebb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1obb_A_389	1obb	A	CSWCYSTEINE-S-DIOXIDE	E - 391
1r0p_A_1076	1r0p	A	KSAK-252A	I - 1084
1r0p_A_1076	1r0p	A	KSAK-252A	G - 1085
1r0p_A_1076	1r0p	A	KSAK-252A	R - 1086
1r0p_A_1076	1r0p	A	KSAK-252A	G - 1087
1r0p_A_1076	1r0p	A	KSAK-252A	F - 1089
1r0p_A_1076	1r0p	A	KSAK-252A	V - 1092

Clusters included in this Subclass

CLUSTER: HA.1.23

CLUSTER: HA.2.32

CLUSTER: HA.3.142

CLUSTER: HA.3.65