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Information on SUBCLASS 2.2.8
Subclass Accession number: 7742
Subclass: 2.2.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 14.8 +/- 15.3
Average RMSD (Å) : 0.700 +/- 0.169

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: phXpGX
(φψ)-conformation: pbaaeb
Pattern: [giktv]xx[fiklt]x[DENPQRT]xx[dehnry][G]x[CFKLV]x[ailtv][aenpt]
Conservation:-0.404-0.272-0.376-0.2240.0000.019-0.532-0.156-0.2763.560-0.523-0.248-0.1940.002-0.377
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ati_A_2901ati   A292306VDILYRFPHGSLELEEEEEEEETTEEEEEEbbbbbxxaaexbxab
1gkl_A_8281gkl   A830844VKETYTGINGTKSLNEEEEEEETTEEEEEEbxbbbbbaaexbbbb
1m5s_A_1371m5s   A138152KVYKVPIMEGDFLAEEEEEEEETTEEEEEExbbxbwbaaebxbbp
1oal_A_151oal   A1832TIELSQNKYGVVFIPEEEEEEETTEEEEEEbbxbbxbaaexbbbx
1sfe_*_151sfe   -1529RYALADCELGRCLVAEEEEEEETTEEEEEEbbbbbxbaaexbbbb
1ubk_L_4691ubk   L471485GVGFVNAPRGGLSHWEEEEEEETTEEEEEEbbbbbxxaaexbbbb
2aps_A_292aps   A3347TVEITESAYGLVFTPEEEEEEETTEEEEEEbbbbbbbaaexbbbx
4ubp_A_794ubp   A8094IQAEATFPDGTKLVTEEEEEEETTEEEEEEbbbbbxxaaexbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ubk_L_4691ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) A - 477
1ubk_L_4691ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) P - 478
1ubk_L_4691ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) R - 479
1ubk_L_4691ubk   L     CMOCARBON MONOXIDE R - 479
1ubk_L_4691ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) G - 480
1ubk_L_4691ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) L - 482
2aps_A_292aps   A     CUCOPPER (II) ION H - 48
2aps_A_292aps   A     CUCOPPER (II) ION L - 49
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ati_A_2901ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.D - 293
1ati_A_2901ati   A SA1THESE RESIDUES ARE FOUND TO BE RESPONSIBLE FOR ON THE BASIS OF MODELLING GLYCYL-AMP INTO THE ACTIVE SITE OF GLYCYL-TRNA SYNTHETASE.E - 304

Clusters included in this Subclass
CLUSTER: HA.3.37