Information on SUBCLASS 2.2.11 |
Subclass Accession number: 7745
Subclass: 2.2.11 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 41.6 +/- 29.8 Average RMSD (Å) : 0.350 +/- 0.227 Consensus geometry
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Consensus Sequence: | hpXpWV |
(φψ)-conformation: | abaabb |
Pattern: | [fhly] | [fitvw] | [CS] | [GS] | [FG] | [ASTV] | [LV] | [IKLMV] | [dgnrs] | [DPQR] | [CKNQRST] | [EW] | [IV] | [ILMV] |
Conservation: | -0.771 | -1.313 | 1.600 | 0.829 | 0.260 | -0.714 | 0.385 | -0.553 | -0.921 | -0.512 | -1.072 | 1.865 | 0.810 | 0.107 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ao5_A_39 | 1ao5 | A | 40 | 53 | HICGGVLLDRNWVL | EEEEEEEEETTEEE | xabbbbxabaabbb |
1bru_P_37 | 1bru | P | 40 | 53 | HTCGGTLVDQSWVL | EEEEEEEEETTEEE | pabxbbxabaabbx |
1gj7_B_38 | 1gj7 | B | 40 | 53 | YVCGGSLMSPCWVI | EEEEEEEEETTEEE | xabxbbxabaabbb |
1gvk_B_37 | 1gvk | B | 40 | 53 | HTCGGTLIRQNWVM | EEEEEEEEETTEEE | xabxbbxabaabbx |
1jof_A_61 | 1jof | A | 61 | 74 | KWSSFAVKSPTEIV | EEEEEEEEETTEEE | bbxbbxbabaabbb |
1lto_A_38 | 1lto | A | 40 | 53 | HFCGGSLIHPQWVL | EEEEEEEEETTEEE | xabxbbxabaabbb |
1npm_A_39 | 1npm | A | 40 | 53 | LICGGVLVGDRWVL | EEEEEEEEETTEEE | xabxbbxabaabbx |
2pka_A_39 | 2pka | A | 40 | 53 | FQCGGVLVNPKWVL | EEEEEEEEETTEEE | xabbbbxabaabbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1bru_P_37 | 1bru | P | 1NB2-(2-HYDROXY-CYCLOPENTYL)-PENT-4-ENAL | T - 41 |
1bru_P_37 | 1bru | P | 1NB2-(2-HYDROXY-CYCLOPENTYL)-PENT-4-ENAL | C - 42 |
1gj7_B_38 | 1gj7 | B | 1326-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE | V - 41 |
1gj7_B_38 | 1gj7 | B | 1326-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE | C - 42 |
1jof_A_61 | 1jof | A | MSESELENOMETHIONINE | K - 61 |
1jof_A_61 | 1jof | A | MSESELENOMETHIONINE | P - 70 |
1jof_A_61 | 1jof | A | MSESELENOMETHIONINE | I - 73 |
Clusters included in this Subclass |
CLUSTER: HA.1.19 |