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Information on SUBCLASS 2.4.1
Subclass Accession number: 7795
Subclass: 2.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 53

Average sequence ID (%) : 16.0 +/- 19.5
Average RMSD (Å) : 0.266 +/- 0.107

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXpcXX
(φψ)-conformation: bbllbp
Pattern: [afgikltv]xx[adegknqrs][degknq]xxx
Conservation:-0.274-0.586-0.6840.9502.076-0.347-0.827-0.308
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_1801a8d   -183190LYINGVLMEEETTEEEbbblvbxa
1arb_*_251arb   -2835YSKSGTLAEEETTEEEbbblvbpa
1aut_C_1981aut   C201208ASFHGTWFEEETTEEEbxblvxxb
1b04_A_1181b04   A123130RYEDGYFVEEETTEEEbbblgxxa
1b6r_A_1801b6r   A183190LHQDGILREEETTEEEbbblvbxa
1b8a_A_3521b8a   A355362LEYRGVEIEEETTEEEbbblvbxa
1bqy_A_1981bqy   A199206LICNGIFQEEETTEEEbbblvbxa
1c3c_A_1351c3c   A138145GRTHGVHAEEETTEEExbbvvbxa
1cgh_A_1981cgh   A199206LLCNNVAHEEETTEEEbxblvbxa
1e1o_A_4121e1o   A415422FFIGGREIEEETTEEEbbbvvbxa
1e2t_A_1581e2t   A162169FRHHEHWQEESSSSEEbxbvvbpb
1e9y_B_4481e9y   B449456IIKGGFIAEEETTEEEbxxlvbxa
1ejx_C_14461ejx   C14471454VIKGGMIAEEETTEEEbbblvbxa
1ekb_B_301ekb   B3340LYFDDQQVEEETTEEEbbbllbxa
1eov_A_4691eov   A472479FFMRGEEIEEETTEEEbbblvbxa
1euf_A_1981euf   A199206LVCNGVAQEEETTEEExbblvbxa
1f8d_A_2501f8d   A256263YFKEGKILEEETTEEEbbblvbxa
1fi8_A_1981fi8   A199206LVCKKVAAEEETTEEEbxblvbxa
1fni_A_1981fni   A199206VVCNGQLQEEETTEEEbbblvbxa
1fuj_A_1981fuj   A199206LICDGIIQEEETTEEEbxbvvbxa
1g2l_A_2031g2l   A206213TRFKDTYFEEETTEEEbxblvbbb
1g8m_A_2621g8m   A265272SFKHVSPAEEETTEEEbbbllbxa
1gkr_A_4221gkr   A426433TMVRGTVVEEETTEEEbbblvbxa
1gv4_A_5611gv4   A566573YLRDKVVVEESSSBEEbbbgvbxa
1hj8_A_1981hj8   A199206VVCNGELQEEETTEEEbbblvbxa
1hj9_A_1981hj9   A199206VVCSGKLQEEETTEEEbbblvbxa
1hn0_A_4981hn0   A498504AWRHEGN.EEETTEE.bbblvbp.
1iau_A_1981iau   A199206LVCNKVAQEEETTEEExxblUbxa
1ihg_A_171ihg   A2229VDIGGERVEEETTEEEbbblvbxa
1ist_A_31ist   A815VEADGQPIEEETTEEEbbblvxxa
1jp4_A_1341jp4   A139146IAYEGKAIEEETTEEEbbblvbxa
1jz7_A_6511jz7   A656663VALDGKPLEEETTEEEbbblvxwa
1k6w_A_191k6w   A2330HLQDGKISEEETTEEExbblvbxa
1k7w_A_1561k7w   A159166GYTHLQKAEEETTEEEbbbvlbpa
1ka1_A_1571ka1   A162169LIVDGVVQEEETTEEEbbblvbxa
1kf6_A_1551kf6   A161168LVDDGHVREEETTEEEbbblvbxa
1l0g_A_271l0g   A3239VIYQGKPYEEETTEEEbbblvbxb
1lo6_A_1981lo6   A199206LVCGDHLREEETTEEEbbblvbxa
1lvo_A_1101lvo   A115122ACYEGCPGEEETTEEExbblvbwa
1m07_A_921m07   A95102KCENQYPVEEETTEEExbblvbwa
1mve_A_1091mve   A112119WTVDGQEVEEETTEEEbbblvbxa
1nn6_A_2001nn6   A201208LLCAGVAQEEETTEEExbbvgbxa
1npm_A_1981npm   A199206LVCDGMLQEEETTEEEbbblvbxa
1onc_*_861onc   -8996TCENQAPVEEETTEEExbblvbwa
1pgs_*_2101pgs   -214221IAINNANTEEETTEEEbbblvbpa
1ppf_E_1981ppf   E199206LVCNGLIHEEETTEEEbbblvbxa
1q5n_A_1481q5n   A151158GRTWLQQAEEETTEEExbblvbpa
1qq4_A_431qq4   A4451ARIGGAVVEEETTEEExbbvvbxa
1ubk_L_371ubk   L4249EVENGKVKEEETTEEEbbblvbxa
1ubk_L_4801ubk   L487494RIEDGKIGEEETTEEEbxblvbxa
1uj1_A_1111uj1   A116123ACYNGSPSEEETTEEExbblvbwa
2frv_B_4642frv   B471478VQRGGKIEEEESSSEEbbbvvbxa
4ubp_C_4494ubp   C450457VIKGGIIAEEETTEEEbxblvbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aut_C_1981aut   C     MAIDEOXO-METHYLARGININE V - 213
1aut_C_1981aut   C     DPND-PHENYLALANINE S - 214
1aut_C_1981aut   C     MAIDEOXO-METHYLARGININE S - 214
1aut_C_1981aut   C     DPND-PHENYLALANINE W - 215
1aut_C_1981aut   C     MAIDEOXO-METHYLARGININE W - 215
1b8a_A_3521b8a   A     MNMANGANESE (II) ION D - 354
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 354
1b8a_A_3521b8a   A     MNMANGANESE (II) ION E - 361
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 361
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 362
1b8a_A_3521b8a   A     MNMANGANESE (II) ION S - 363
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 363
1b8a_A_3521b8a   A     MNMANGANESE (II) ION S - 364
1b8a_A_3521b8a   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 364
1e1o_A_4121e1o   A     GOLGLYCEROL R - 412
1e1o_A_4121e1o   A     GOLGLYCEROL F - 413
1e1o_A_4121e1o   A     LYSLYSINE E - 414
1e1o_A_4121e1o   A     GOLGLYCEROL E - 414
1e1o_A_4121e1o   A     LYSLYSINE E - 421
1e1o_A_4121e1o   A     GOLGLYCEROL E - 421
1e1o_A_4121e1o   A     LYSLYSINE N - 424
1e1o_A_4121e1o   A     GOLGLYCEROL N - 424
1e1o_A_4121e1o   A     LYSLYSINE G - 425
1e1o_A_4121e1o   A     LYSLYSINE F - 426
1e1o_A_4121e1o   A     GOLGLYCEROL F - 426
1fuj_A_1981fuj   A     NAGN-ACETYL-D-GLUCOSAMINE I - 200
1fuj_A_1981fuj   A     FUCFUCOSE I - 200
1fuj_A_1981fuj   A     FUCFUCOSE C - 201
1fuj_A_1981fuj   A     FUCFUCOSE D - 202
1fuj_A_1981fuj   A     FUCFUCOSE G - 207
1fuj_A_1981fuj   A     FUCFUCOSE I - 208
1g2l_A_2031g2l   A     T87[(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)-PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER V - 218
1g2l_A_2031g2l   A     T87[(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)-PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER S - 219
1g2l_A_2031g2l   A     T87[(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)-PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER W - 220
1jp4_A_1341jp4   A     MGMAGNESIUM ION L - 136
1jz7_A_6511jz7   A     DMSDIMETHYL SULFOXIDE L - 651
1jz7_A_6511jz7   A     GALD-GALACTOSE D - 659
1jz7_A_6511jz7   A     DMSDIMETHYL SULFOXIDE P - 669
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE T - 161
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE H - 162
1k7w_A_1561k7w   A     AS1ARGININOSUCCINATE A - 166
1kf6_A_1551kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE H - 155
1kf6_A_1551kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 156
1kf6_A_1551kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 157
1kf6_A_1551kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 158
1lvo_A_1101lvo   A     DOXDIOXANE S - 110
1lvo_A_1101lvo   A     DOXDIOXANE F - 111
1lvo_A_1101lvo   A     DOXDIOXANE N - 112
1lvo_A_1101lvo   A     DOXDIOXANE A - 115
1lvo_A_1101lvo   A     DOXDIOXANE C - 116
1lvo_A_1101lvo   A     DOXDIOXANE Y - 117
1lvo_A_1101lvo   A     DOXDIOXANE C - 120
1lvo_A_1101lvo   A     DOXDIOXANE P - 121
1lvo_A_1101lvo   A     DOXDIOXANE G - 122
1lvo_A_1101lvo   A     DOXDIOXANE S - 123
1lvo_A_1101lvo   A     DOXDIOXANE G - 126
1lvo_A_1101lvo   A     DOXDIOXANE V - 127
1m07_A_921m07   A     PCAPYROGLUTAMIC ACID E - 97
1m07_A_921m07   A     PCAPYROGLUTAMIC ACID V - 102
1m07_A_921m07   A     PCAPYROGLUTAMIC ACID H - 103
1ppf_E_1981ppf   E     FUCFUCOSE V - 200
1ppf_E_1981ppf   E     FUCFUCOSE N - 202
1qq4_A_431qq4   A     GOLGLYCEROL R - 57
1ubk_L_371ubk   L     MPD2-METHYL-2,4-PENTANEDIOL R - 38
1ubk_L_371ubk   L     MPD2-METHYL-2,4-PENTANEDIOL E - 40
1ubk_L_371ubk   L     MPD2-METHYL-2,4-PENTANEDIOL V - 41
1ubk_L_371ubk   L     MPD2-METHYL-2,4-PENTANEDIOL E - 42
1ubk_L_371ubk   L     MPD2-METHYL-2,4-PENTANEDIOL Y - 52
1ubk_L_4801ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) G - 480
1ubk_L_4801ubk   L     FNE(MU-SULPHIDO)-BIS(MU-CYS,S)-[TRICARBONYLIRON-DI-(CYS, S)NICKEL(II)](FE-NI) L - 482
1ubk_L_4801ubk   L     MGMAGNESIUM ION Q - 497
1ubk_L_4801ubk   L     MGMAGNESIUM ION L - 498
1ubk_L_4801ubk   L     MGMAGNESIUM ION V - 499
2frv_B_4642frv   B     FCOCARBONMONOXIDE-(DICYANO) IRON G - 464
2frv_B_4642frv   B     OOXYGEN ATOM G - 464
2frv_B_4642frv   B     FCOCARBONMONOXIDE-(DICYANO) IRON L - 466
2frv_B_4642frv   B     OOXYGEN ATOM L - 466
2frv_B_4642frv   B     OOXYGEN ATOM Q - 481
2frv_B_4642frv   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED Q - 481
2frv_B_4642frv   B     OOXYGEN ATOM L - 482
2frv_B_4642frv   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED L - 482
2frv_B_4642frv   B     OOXYGEN ATOM V - 483
2frv_B_4642frv   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED V - 483
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hj9_A_1981hj9   A S41SO4 BINDING SITE FOR RESIDUE A247K - 204

Clusters included in this Subclass
CLUSTER: HA.1.4
CLUSTER: HA.3.7
CLUSTER: HA.4.115