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Information on SUBCLASS 2.5.1
Subclass Accession number: 7813
Subclass: 2.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 47

Average sequence ID (%) : 9.3 +/- 12.7
Average RMSD (Å) : 0.451 +/- 0.213

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXXX
(φψ)-conformation: bbpgbb
Pattern: xxxx[adegknqt]xxxx
Conservation:-0.054-0.675-0.8440.6522.258-0.839-0.297-0.5980.397
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a05_A_2631a05   A266274SLGEGRAMYEE-SS-EEEbbbxvbbbb
1b24_A_701b24   A7280VKGDTRYELEE-SS-EEEbbxxgbbbb
1bif_*_4181bif   -423431TPVAYGCKVEE-SSSEEEbwbxvbbxb
1cvr_A_851cvr   A8592KITPGIKS.EEETTEEE.xbbpvbbb.
1cyx_*_1271cyx   -132140VSMDWKWFFEEETTEEEEbxbxvbbbb
1czf_A_2371czf   A258266KTISGATGSEEETT--EEbbxpvxbeb
1dci_A_571dci   A6169SAQKHVLHVEEETTEEEExabpvbbbb
1deu_A_1101deu   A112120CNEFKECHAEEETTEEEEbabpvbbbx
1dl5_A_2651dl5   A268276EFLDDRMRIEEETTEEEExxbxlbbbb
1e1h_A_321e1h   A3644KIHNKIWVIEEETTEEEExabpvbbbb
1edm_B_611edm   B6371KDDINSYECEEETTEEEEbxbxlbbbb
1ejd_A_1351ejd   A137145KLEEGYVKAEEETTEEEEbbbpgbbbb
1f1j_A_1451f1j   A145151.GEENVIY..EETTEEE..bbpvbbx.
1ffv_C_1531ffv   C153159FLGTYMT..EEETTEE..xabxvbb..
1g38_A_2981g38   A298303.LKPGWV...EETTEE...xbxvbb..
1gdo_A_1791gdo   A181189GLGMGENFIEE-SS-EEEbxbbvbbbb
1gg4_A_3181gg4   A321329QLAENQLLLEEETTEEEExabxUbbbb
1gx3_A_2251gx3   A228236VHRSGATEHEEETTEEEEbbbxvbbbb
1hbn_B_2831hbn   B286294KELTDYKVYEEETTEEEEbbxxlbxxx
1hg8_A_2481hg8   A269277KSNSGATGTEEETT--EEbbxxvbbbb
1hyo_A_3891hyo   A396404CQGDGYRVGEE-SS-EEExbxxvbbxb
1i1q_A_931i1q   A95103DVLPAGRVLEEETTEEEEbbbxlbbbb
1i7d_A_241i7d   A2432RKGDGFIECEEETTEEEEbxbxgbbxb
1i7q_A_931i7q   A95103QARPNGRELEEETTEEEEbxbxlbbbb
1ivy_A_4071ivy   A414422KEFSHIAFLEEESSEEEEbbbxvbbbb
1jje_A_81jje   A1119KLDEGVYVHEEETTEEEExabpvbbbb
1kuu_A_301kuu   A3341SIQEERVAVEEETTEEEExxbxlbbbb
1l0g_A_2651l0g   A266274YQGLGWEMLEE-SS-EEEbxbxGxbbb
1li4_A_3171li4   A320328NIKPQVDRYEEETTEEEExabpvbbbx
1lvl_*_1181lvl   -120128VLDGKQVEVEEETTEEEExabxNbbbb
1m8t_A_751m8t   A7684DCSEGTLTCEE-SS-EEEbbxxgxbbx
1n62_C_1521n62   C153159YQGAYFT..EEETTEE..babxvbb..
1nme_A_1221nme   A122129.GEEGIIFG.EETTEEEE.bbpvbbxx
1nrz_A_1151nrz   A116123QLTKAVSL.EEETTEEE.xabpvbbb.
1nzi_A_1311nzi   A133141NNFIGGYFCEEETTEEEEbxbxvbbbb
1o63_A_341o63   A3441REGKDIVC.EEETTEEE.bbbpvbbb.
1o94_A_5921o94   A596604RIEPGRMEIEEETTEEEEbbbpvbbxb
1ofg_A_3011ofg   A303311VQTPGHANQEEETTEEEEbbbxvbbbb
1p9l_A_1921p9l   A198206FGTEGETLTEEETTEEEEbbbpvbbbb
1pyo_A_1131pyo   A113119.GVEGAIY..EETTEEE..bbpvbbx.
1q16_A_3391q16   A343351EERDGYYAAEE-SSSEEExxbxvbbbx
1qh5_A_1361qh5   A136141.LFVAGC...EETTEE...bbxvbb..
1rlv_A_861rlv   A8694FLLTKKPYLEEESSSEEEbbxbgbxbb
1ryp_A_2231ryp   A227235VATKDKFFTEEETTEEEEbbbpvbbbb
1vdr_A_1391vdr   A145153TDHEGFTLQEE-SS-EEEbxbxvbbxb
1wht_B_3761wht   B382390QVYKGLTLVEEETTEEEEbbbxgbbbb
1ykf_A_21ykf   A614MLSIGKVGWEEETTEEEExabpvbbex
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a05_A_2631a05   A     IPM3-ISOPROPYLMALIC ACID E - 275
1b24_A_701b24   A     MSESELENOMETHIONINE L - 80
1b24_A_701b24   A     MSESELENOMETHIONINE V - 82
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER A - 426
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Y - 427
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION M - 134
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 136
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 138
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE K - 239
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE N - 240
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE T - 242
1czf_A_2371czf   A     ZNZINC ION E - 252
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE E - 269
1dl5_A_2651dl5   A     CDCADMIUM ION D - 271
1dl5_A_2651dl5   A     CDCADMIUM ION D - 272
1dl5_A_2651dl5   A     CDCADMIUM ION G - 278
1edm_B_611edm   B     CACALCIUM ION D - 64
1edm_B_611edm   B     CACALCIUM ION D - 65
1edm_B_611edm   B     CACALCIUM ION I - 66
1edm_B_611edm   B     CACALCIUM ION N - 67
1edm_B_611edm   B     CACALCIUM ION S - 68
1ejd_A_1351ejd   A     PO4PHOSPHATE ION E - 135
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 137
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION A - 145
1ejd_A_1351ejd   A     PO4PHOSPHATE ION S - 146
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 327
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 329
1gg4_A_3181gg4   A     MSESELENOMETHIONINE D - 330
1jje_A_81jje   A     ZNZINC ION K - 8
1jje_A_81jje   A     ACTACETATE ION K - 8
1jje_A_81jje   A     ZNZINC ION E - 10
1jje_A_81jje   A     ACTACETATE ION E - 10
1jje_A_81jje   A     ZNZINC ION V - 18
1jje_A_81jje   A     ZNZINC ION T - 20
1jje_A_81jje   A     ACTACETATE ION T - 20
1jje_A_81jje   A     ACTACETATE ION F - 22
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 118
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 119
1m8t_A_751m8t   A     HEZHEXANE-1,6-DIOL D - 76
1m8t_A_751m8t   A     HEZHEXANE-1,6-DIOL C - 77
1m8t_A_751m8t   A     HEZHEXANE-1,6-DIOL S - 78
1m8t_A_751m8t   A     HEZHEXANE-1,6-DIOL E - 79
1n62_C_1521n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 152
1nme_A_1221nme   A     1583-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID G - 122
1nme_A_1221nme   A     1583-(2-MERCAPTO-ACETYLAMINO)-4-OXO-PENTANOIC ACID E - 123
1nzi_A_1311nzi   A     CACALCIUM ION N - 134
1nzi_A_1311nzi   A     CACALCIUM ION F - 135
1nzi_A_1311nzi   A     CACALCIUM ION I - 136
1nzi_A_1311nzi   A     CACALCIUM ION G - 137
1nzi_A_1311nzi   A     CACALCIUM ION G - 138
1nzi_A_1311nzi   A     CACALCIUM ION Y - 139
1o63_A_341o63   A     MSESELENOMETHIONINE R - 34
1o63_A_341o63   A     MSESELENOMETHIONINE C - 41
1p9l_A_1921p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL L - 197
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 204
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 206
1qh5_A_1361qh5   A     ZNZINC ION F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE C - 141

Clusters included in this Subclass
CLUSTER: HA.2.6
CLUSTER: HA.3.9
CLUSTER: HA.4.36