Information on SUBCLASS 3.2.6 |
Subclass Accession number: 7838
Subclass: 3.2.6 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 54.2 +/- 0.5 Average RMSD (Å) : 0.300 +/- 0.100 Consensus geometry
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Consensus Sequence: | pGpTTcX |
(φψ)-conformation: | bbaaaeb |
Pattern: | [A] | [IV] | [CKT] | [HKR] | [RS] | [G] | [RS] | [T] | [T] | [GK] | [TVY] | [HQT] | [CS] | [G] | [ST] | [IV] | [T] | [A] | [KLV] | [N] | [AV] | [T] | [AV] | [N] |
Conservation: | 0.362 | 0.094 | -1.315 | -0.632 | -0.893 | 1.480 | -0.897 | 0.921 | 0.921 | -0.749 | -1.253 | -1.129 | -0.519 | 1.480 | -0.247 | 0.091 | 0.921 | 0.362 | -1.440 | 1.480 | -0.715 | 0.921 | -0.721 | 1.480 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1hpg_A_135 | 1hpg | A | 135 | 158 | AIKKSGSTTKVTSGTVTAVNVTVN | EEEEEETTTEEEEEEEEEEEEEEE | xbbbbbaaaexbbbbxabbvxxbx |
1qq4_A_99 | 1qq4 | A | 99 | 122 | AVCHSGRTTGYQCGTITAKNVTAN | EEEEEETTTEEEEEEEEEEEEEEE | xbbbbbaaaebbbbxbabblxbbb |
1sgp_E_135 | 1sgp | E | 135 | 158 | AVTRRGSTTGTHSGSVTALNATVN | EEEEEETTTEEEEEEEEEEEEEEE | xbbbbbaaaebbbebxabblxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1qq4_A_99 | 1qq4 | A | GOLGLYCEROL | T - 107 |
1qq4_A_99 | 1qq4 | A | GOLGLYCEROL | G - 108 |
1qq4_A_99 | 1qq4 | A | GOLGLYCEROL | Y - 109 |
1qq4_A_99 | 1qq4 | A | GOLGLYCEROL | Q - 110 |
1qq4_A_99 | 1qq4 | A | GOLGLYCEROL | Y - 123 |
Clusters included in this Subclass |
CLUSTER: HA.2.75 |