Logo
Information on SUBCLASS 6.23.1
Subclass Accession number: 788
Subclass: 6.23.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0005529 (>50 %)  GO:0030246 (>50 %)  
SCOP : 49898 (>50 %)  49899 (>50 %)  49900 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 27.1 +/- 28.8
Average RMSD (Å) : 0.800 +/- 0.346

Consensus geometry
d (Å): 11 delta (°): 135-180 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: chcSXXXXXX
(φψ)-conformation: bblbappabb
Pattern: [HI]x[FG][IV][DK][ILV][KN][S]x[AR][AS][AIK][KV][TV]x[KPQ]
Conservation:-0.067-0.903-0.3821.4490.3900.6301.1271.919-0.980-0.1060.508-1.624-0.5770.364-1.410-0.336
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1gzc_A_1421gzc   A142157HIGIDVNSIRSIKTQPEEEEEESSSS-SEEEEbxbbbblbaxpabbbx
1nls_*_241nls   -2439HIGIDIKSVRSKKTAKEEEEEESSSS-SEEEEbbbbbbvbaxpabbbx
1qqg_A_1911qqg   A192207ISFVKLNSEAAAVVLQEEEEETT-SS-SEEEEbbbbxpvxabxabbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gzc_A_1421gzc   A     MNMANGANESE (II) ION H - 142
1gzc_A_1421gzc   A     CACALCIUM ION H - 142
1gzc_A_1421gzc   A     MNMANGANESE (II) ION G - 144
1gzc_A_1421gzc   A     MNMANGANESE (II) ION D - 146
1gzc_A_1421gzc   A     MNMANGANESE (II) ION I - 150
1gzc_A_1421gzc   A     MNMANGANESE (II) ION S - 152
1gzc_A_1421gzc   A     MNMANGANESE (II) ION T - 155
1nls_*_241nls   *     MNMANGANESE (II) ION H - 24
1nls_*_241nls   *     CACALCIUM ION H - 24
1nls_*_241nls   *     MNMANGANESE (II) ION D - 28
1nls_*_241nls   *     MNMANGANESE (II) ION V - 32
1nls_*_241nls   *     MNMANGANESE (II) ION S - 34
1nls_*_241nls   *     MNMANGANESE (II) ION T - 37
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzc_A_1421gzc   A MNAMN BINDING SITE FOR CHAIN AH - 142

Clusters included in this Subclass
CLUSTER: HA.6.138