Information on SUBCLASS 6.23.1 |
Subclass Accession number: 788
Subclass: 6.23.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005529 (>50 %) GO:0030246 (>50 %) SCOP : 49898 (>50 %) 49899 (>50 %) 49900 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 27.1 +/- 28.8 Average RMSD (Å) : 0.800 +/- 0.346 Consensus geometry
|
Consensus Sequence: | chcSXXXXXX |
(φψ)-conformation: | bblbappabb |
Pattern: | [HI] | x | [FG] | [IV] | [DK] | [ILV] | [KN] | [S] | x | [AR] | [AS] | [AIK] | [KV] | [TV] | x | [KPQ] |
Conservation: | -0.067 | -0.903 | -0.382 | 1.449 | 0.390 | 0.630 | 1.127 | 1.919 | -0.980 | -0.106 | 0.508 | -1.624 | -0.577 | 0.364 | -1.410 | -0.336 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1gzc_A_142 | 1gzc | A | 142 | 157 | HIGIDVNSIRSIKTQP | EEEEEESSSS-SEEEE | bxbbbblbaxpabbbx |
1nls_*_24 | 1nls | - | 24 | 39 | HIGIDIKSVRSKKTAK | EEEEEESSSS-SEEEE | bbbbbbvbaxpabbbx |
1qqg_A_191 | 1qqg | A | 192 | 207 | ISFVKLNSEAAAVVLQ | EEEEETT-SS-SEEEE | bbbbxpvxabxabbxx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | H - 142 |
1gzc_A_142 | 1gzc | A | CACALCIUM ION | H - 142 |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | G - 144 |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | D - 146 |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | I - 150 |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | S - 152 |
1gzc_A_142 | 1gzc | A | MNMANGANESE (II) ION | T - 155 |
1nls_*_24 | 1nls | * | MNMANGANESE (II) ION | H - 24 |
1nls_*_24 | 1nls | * | CACALCIUM ION | H - 24 |
1nls_*_24 | 1nls | * | MNMANGANESE (II) ION | D - 28 |
1nls_*_24 | 1nls | * | MNMANGANESE (II) ION | V - 32 |
1nls_*_24 | 1nls | * | MNMANGANESE (II) ION | S - 34 |
1nls_*_24 | 1nls | * | MNMANGANESE (II) ION | T - 37 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gzc_A_142 | 1gzc | A | MNAMN BINDING SITE FOR CHAIN A | H - 142 |
Clusters included in this Subclass |
CLUSTER: HA.6.138 |