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Information on SUBCLASS 4.4.1
Subclass Accession number: 7893
Subclass: 4.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 17.1 +/- 18.3
Average RMSD (Å) : 0.506 +/- 0.246

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XpXpcXhX
(φψ)-conformation: bbaalppb
Pattern: xx[dgknqst][adegknrs][adegknrst][dgn]x[acilmpvy]x
Conservation:-0.555-0.6830.886-0.5000.3352.250-0.495-0.558-0.679
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8d_*_3911a8d   -394402LYDDKNASLEE-SSS-EExbxaavxxa
1ava_A_971ava   A97105HKDGRGIYCEE-TTS-EEbxxaavxxa
1c0d_A_121c0d   A1321ILDANNVPVEE-TTS-EEbbxaalxwb
1df7_A_1431df7   A143151RFSRSGLRYEE-TTS-EEbbxaavxxb
1dpj_A_2381dpj   A238246KKGWTGQYTEE-TTSSEEbxbaavbxb
1e4e_A_2861e4e   A294302FLQDNGRIVEE-TT--EEbbxaavxxb
1f8m_A_2491f8m   A252260ERTREGFYREE-TTS-EExbbaavxbx
1fp3_A_3611fp3   A361369YLNREGKVAEE-TTS-EEbbxaavxxa
1fui_A_4041fui   A404412QRDSEGNPTEE-TTS-EExbxaavxxb
1gdo_A_2191gdo   A221229IFDKTGAEVEE-TT--EEbbxaavxxb
1hiz_A_3321hiz   A333341YYDANGNVVEE-TTS-EExbxaavbpb
1hzt_A_351hzt   A3947LFNAKGQLLEE-TT--EEbbxaavxxx
1i2k_A_1611i2k   A164172VLDSEGWVTEEBTTSBEEbbxaavxpa
1iw7_C_8381iw7   C839847LANRHGNKGEEETTS-EEbbxaagxbb
1j11_A_4791j11   A485493IKSKDGTVKEE-TTS-EExbxaavbxa
1j7g_A_551j7g   A5563FSDENDKMNEE-TTS-EEbxxaavxxa
1j9q_A_1621j9q   A162170LHDGKGKALEE-TTS-EExbxaavxxb
1jke_A_551jke   A5563FSDAEGKMNEE-TTS-EEbxxaagbxa
1k2y_X_2481k2y   X250258VVTNTGTIIEEETT--EEbbxaavxxb
1khb_A_3831khb   A383391ITSWKNKEWEE-TTSSEEbbxaavbxb
1kxr_A_2621kxr   A262270AITFKNLVREE-TTS-EEbxbaalbbx
1lkt_A_651lkt   A6674IINAAGKIVEE-TTS-EEbbxaavbxb
1mdb_A_4091mdb   A416424RLTRDGYIVEE-TTS-EEbbxaavxbb
1nif_*_1621nif   -162170LKDEKGQPLEE-TTS-EExbxaavxxb
1o6i_A_461o6i   A5361DINSNLECAEE-TTSSEEbbxaavbxb
1o7d_C_5351o7d   C537545VKDPGGKIVEE-SSS-EEbbxaagxxb
1oac_A_5851oac   A593601KENRMGNPVEE-TTS-EEbbxaavbpx
1p6w_A_981p6w   A98106YKDSRGIYCEE-TTS-EEbxxaavbxN
2blt_A_2022blt   A202209.GYRDGKAV.EESSSSEE.xbFavxxb
2nap_A_2502nap   A253261FMDAEGKPSEE-TTS-EEbbxaavxpb
2plc_*_802plc   -8492RAKDNLNIYEE-TTSEEEbbbaavbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8d_*_3911a8d   *     AUGOLD ION Q - 391
1a8d_*_3911a8d   *     AUGOLD ION L - 404
1df7_A_1431df7   A     GOLGLYCEROL R - 143
1df7_A_1431df7   A     GOLGLYCEROL R - 152
1df7_A_1431df7   A     GOLGLYCEROL L - 153
1df7_A_1431df7   A     GOLGLYCEROL Y - 154
1df7_A_1431df7   A     GOLGLYCEROL Y - 156
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE R - 290
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 290
1e4e_A_2861e4e   A     MGMAGNESIUM ION R - 290
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE D - 292
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 292
1e4e_A_2861e4e   A     MGMAGNESIUM ION D - 292
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE F - 294
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 304
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 304
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 304
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE E - 305
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION V - 306
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 307
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 307
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 307
1i2k_A_1611i2k   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 173
1iw7_C_8381iw7   C     MGMAGNESIUM ION K - 846
1iw7_C_8381iw7   C     MGMAGNESIUM ION K - 851
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE Y - 409
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE T - 411
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 412
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE D - 413
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE V - 425
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE G - 427
1mdb_A_4091mdb   A     AMPADENOSINE MONOPHOSPHATE R - 428
1o6i_A_461o6i   A     GOLGLYCEROL H - 46
1o6i_A_461o6i   A     DPRD-PROLINE F - 51
1o6i_A_461o6i   A     ARGARGININE F - 51
1oac_A_5851oac   A     CACALCIUM ION L - 588
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4e_A_2861e4e   A AC1PHY BINDING SITE FOR CHAIN AR - 290
2plc_*_802plc   * CICINOSITOL BINDING SITE.H - 93

Clusters included in this Subclass
CLUSTER: HA.4.15
CLUSTER: HA.5.13
CLUSTER: HA.5.36
CLUSTER: HA.6.56