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Information on SUBCLASS 1.2.1
Subclass Accession number: 79
Subclass: 1.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 7.1 +/- 10.6
Average RMSD (Å) : 0.562 +/- 0.172

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 0-45 rho (°): 90-135
Consensus Sequence: XXhXh
(φψ)-conformation: aapbb
Pattern: xxxxx[afilmvwy]x[afgilvwy]x
Conservation:-1.2560.134-1.513-0.1290.1461.0361.4040.177-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6a_*_2971b6a   -306314EVMESYEVEHHHHT-EEEaaaaaxbbb
1dmt_A_6081dmt   A623630YQYGNFSW.HHHHT-EE.aaaaaxbb.
1g9g_A_4321g9g   A444451WINGEIKF.HHHTS-EE.aaaaaxbb.
1gl4_A_4591gl4   A464471IGWMFAVE.HHHHT-EE.aaaaapxx.
1h54_A_221h54   A2532QESMTSLG.HHHHT-EE.aaaaaxbb.
1he1_A_1621he1   A169176GRLLERSI.HHHHT-EE.aaaaaxxb.
1hn0_A_3241hn0   A328335QLFDNYVI.HHHTTSEE.aaaaaxbx.
1ile_*_4921ile   -493501PYVDQVELAHHHTT-EEEaaaaabbbx
1jif_A_561jif   A5765IVADNTSAWHHHTT-EEEaaaaaxbbb
1k75_A_2961k75   A300308QALNASRLIHHHTT-EEEaaaaaxbbb
1kcm_A_1311kcm   A132140EAWKHVEAIHHHTT-EEEaaaaaxxxb
1khb_A_4501khb   A455463FVGAAMRSEHHHHT-EEEaaaaapbbx
1l1q_A_51l1q   A715DAHALIKTIHHHHT-EEEaaaaaxbbb
1nbf_A_3601nbf   A364372FVDYVAVEQHHHHT--EEaaaaaxxbx
1o8a_A_1291o8a   A144152TTYSVATVCHHHHT-EEEaaaaaxbbb
1omh_A_1041omh   A120128QAEARAQARHHHTT-EEEaaaaaxbbb
1qba_*_291qba   -3341DQLSQLKLNHHHTT-EEEaaaaaxbxb
1tgo_A_481tgo   A4957EDVKKITAEHHHTT-EEEaaaaapbbb
1usu_A_4361usu   A438446ALAKLLRYNHHHTT-EEEaaaaaxbbx
1xva_A_1051xva   A105113PAFDKWVIEHHHHT-EEEaaaaaxxbb
2mas_A_1912mas   A192199DLTHQALA.HHHTT-EE.aaaaaxxx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE V - 622
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 623
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 624
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 625
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE G - 626
1dmt_A_6081dmt   A     NAGN-ACETYL-D-GLUCOSAMINE N - 627
1jif_A_561jif   A     BLMBLEOMYCIN A2 A - 59
1jif_A_561jif   A     BLMBLEOMYCIN A2 D - 60
1jif_A_561jif   A     BLMBLEOMYCIN A2 N - 61
1jif_A_561jif   A     BLMBLEOMYCIN A2 T - 62
1jif_A_561jif   A     BLMBLEOMYCIN A2 S - 63
1jif_A_561jif   A     BLMBLEOMYCIN A2 W - 65
1jif_A_561jif   A     BLMBLEOMYCIN A2 E - 67
1k75_A_2961k75   A     MSESELENOMETHIONINE R - 306
1khb_A_4501khb   A     EDO1,2-ETHANEDIOL W - 450
1khb_A_4501khb   A     EDO1,2-ETHANEDIOL Q - 451
1khb_A_4501khb   A     EDO1,2-ETHANEDIOL G - 453
1usu_A_4361usu   A     GOLGLYCEROL K - 441
1usu_A_4361usu   A     GOLGLYCEROL L - 442
1usu_A_4361usu   A     GOLGLYCEROL R - 444
2mas_A_1912mas   A     PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL L - 191
2mas_A_1912mas   A     PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL T - 194
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1usu_A_4361usu   A AC1GOL BINDING SITE FOR CHAIN AK - 441

Clusters included in this Subclass
CLUSTER: HE.1.39
CLUSTER: HE.2.41
CLUSTER: HE.2.55
CLUSTER: HE.2.69
CLUSTER: HE.3.106
CLUSTER: HE.3.108
CLUSTER: HE.3.174
CLUSTER: HE.3.62
CLUSTER: HE.3.66
CLUSTER: HE.4.47
CLUSTER: HE.4.86