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PDB code:

Information on SUBCLASS 5.1.2

Subclass Accession number: 7920 Subclass: 5.1.2 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 39 Average sequence ID (%) : 14.1 +/- 15.6 Average RMSD (Å) : 0.618 +/- 0.277 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1amu_A_455	1amu	A	460	472	VSVHKDHQEQPYL	EEEEE-TTS-EEE	bbbbbxaaUxwbx
1apa_*_226	1apa	-	230	242	PLELKNANGSKWI	EEEEE-TTS-EEE	pbbbbbaagxpbb
1bbu_A_120	1bbu	A	125	137	GKLFKTKTGELSI	EEEEE-TTS-EEE	exxbbxaavxxbb
1bgv_A_56	1bgv	A	61	73	RVPWEDDNGKVHV	EEEEE-TTS-EEE	xbwbbxaavxxbb
1bqb_A_2	1bqb	A	4	16	TGTGKGVLGDTKD	EEEEE-TTS-EEE	bbbbxxaavxbbx
1bry_Y_208	1bry	Y	212	224	PVVLIDGNNQRVS	EEEEE-TTS-EEE	xbxbbxaavxxbb
1bu6_O_287	1bu6	O	288	300	TTIACGPTGEVNY	EEEEE-TTS-EEE	bbbbbxaavxpbb
1cf5_A_206	1cf5	A	210	222	PVDLIKPTGQRFQ	EEEEE-TTS-EEE	xbbbbxaagxxbb
1cv8_*_119	1cv8	-	125	137	VGNAKLNNGQEVI	EEEEEETTS-EEE	aebbbxaavxbbb
1e1o_A_120	1e1o	A	125	137	GTLFKTQTGELSI	EEEEE-TT--EEE	bxxbbxaavxxbb
1euc_B_200	1euc	B	206	218	NPFGETPEGQVVC	EEEEEETTTEEEE	bwxbbbaavbbbx
1eur_*_221	1eur	-	224	236	QYTIINAAGAFQA	EEEEE-TT--EEE	xbbbbxaavxxbb
1ff9_A_356	1ff9	A	363	375	KFEIENKDGSRET	EEEEE-TTS-EEE	bbxbbxaagpbbb
1fs7_A_219	1fs7	A	222	234	KTEWKDDKGVDKT	EEEEE-TT--EEE	xbxbbxaavxxbb
1g5h_D_247	1g5h	D	249	261	SADCQDELGRKGS	EEEEE-TTS-EEE	bbxbbxaavxxbb
1ghe_A_147	1ghe	A	153	165	PGYCATPDGRLHP	EEEEE-TTS-EEE	xlabbxaavxxbx
1gik_A_221	1gik	A	225	237	PLELKNADGTKWI	EEEEE-TTS-EEE	pbxbbxaavxxbb
1gtm_A_35	1gtm	A	40	52	TIPVEMDDGSVKV	EEEEE-TTS-EEE	xbwbxxaavbbbb
1h2w_A_435	1h2w	A	439	451	QIFYPSKDGTKIP	EEEEE-TTS-EEE	bbbbxxaavxxbw
1h6l_A_182	1h6l	A	186	198	YELNADKNGYISG	EEEEE-TTSSEEE	bxxbxxaavbbbb
1i50_B_948	1i50	B	952	964	VLVTTNQDGLKFV	EEEEE-TT--EEE	bbbbbxaavxxbb
1i7d_A_220	1i7d	A	225	237	KAHIVTPADERFT	EEEEE-TT--EEE	bbxxbxaavxbbb
1j9j_A_182	1j9j	A	187	199	FEERVSPFGEKYY	EEEEE-TTS-EEE	bxxbbxaavxxbb
1jfb_A_31	1jfb	A	31	43	VSQVKLFDGSLAW	EEEEE-TTS-EEE	bbxbbxaavxeOx
1ju3_A_6	1ju3	A	11	23	NVMVPMRDGVRLA	EEEEE-TTS-EEE	lxxbxxaavxbbx
1k28_A_187	1k28	A	188	200	LKVYWDTEGYPTI	EEEEE-SSS-EEE	abpbbxaagxwbb
1kei_A_4	1kei	A	7	19	VGVGRGVLGDQKN	EEEEE-TTS-EEE	bbbbbxaavxxbx
1lc0_A_197	1lc0	A	201	213	TVQLETQNKGLLS	EEEEE-TTS-EEE	bbbbbxaavxxbb
1mrj_*_208	1mrj	-	212	224	PVVLINAQNQRVT	EEEEE-TTS-EEE	xbxbbxaavxxbb
1nek_A_164	1nek	A	167	179	LDLVKNQDGAVVG	EEEEE-TTS-EEE	abxbxxaavbxbe
1ng4_A_245	1ng4	A	245	257	CYIVPRKSGRLVV	EEEEE-TTSEEEE	bbbbxxaavxbxb
1nui_A_118	1nui	A	120	132	SQKVRDKDKNFKT	EEEEE-TT---EE	bbbbbbaavbxbb
1one_A_4	1one	A	7	19	ARSVYDSRGNPTV	EEEEE-TTS-EEE	bbxbbxaavbwbx
1oql_A_213	1oql	A	217	229	PIRLAIPPGNFVT	EEEEEETTTEEEE	pbbbxxaavbbbb
1pdz_*_4	1pdz	-	7	19	ARTIFDSRGNPTV	EEEEE-TTS-EEE	xbxbbxaavbwbx
1qci_A_222	1qci	A	226	238	PLELVDASGAKWI	EEEEE-TTS-EEE	pbxbbxaagxxbx
1qo8_A_271	1qo8	A	274	286	VKLVVNDDHSVVG	EEEEE-TTSBEEE	abxbbxaalbxae
2tmg_A_35	2tmg	A	40	52	EFPVRMDDGHVEV	EEEEE-TTS-EEE	bbwbxxaagxxbx
4pro_C_48	4pro	C	51	63	SWIERNEDGSFKL	EEEEE-SSS-EEE	bbxbbxaagxbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bu6_O_287	1bu6	O	GOLGLYCEROL	E - 303
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	G - 119
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	H - 120
1cv8_*_119	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	A - 121
1fs7_A_219	1fs7	A	CACALCIUM ION	Y - 219
1fs7_A_219	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 220
1fs7_A_219	1fs7	A	CACALCIUM ION	F - 220
1fs7_A_219	1fs7	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 238
1fs7_A_219	1fs7	A	CACALCIUM ION	V - 238
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	A - 157
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	T - 158
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	P - 159
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	D - 160
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	G - 161
1ghe_A_147	1ghe	A	MSESELENOMETHIONINE	R - 162
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	W - 164
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 165
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 166
1nek_A_164	1nek	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 167
1ng4_A_245	1ng4	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 246
1ng4_A_245	1ng4	A	PEOHYDROGEN PEROXIDE	Y - 246
1ng4_A_245	1ng4	A	PO4PHOSPHATE ION	S - 252
1ng4_A_245	1ng4	A	PO4PHOSPHATE ION	R - 254
1one_A_4	1one	A	PEPPHOSPHOENOLPYRUVATE	R - 14
1one_A_4	1one	A	PAG2-PHOSPHO-D-GLYCERIC ACID	R - 14
1oql_A_213	1oql	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 213
1oql_A_213	1oql	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 214
1oql_A_213	1oql	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 215
1oql_A_213	1oql	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 216
1oql_A_213	1oql	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 217
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 271
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 272
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 273
1qo8_A_271	1qo8	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 274

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1cv8_*_119	1cv8	*	NULCATALYTIC TRIAD.	H - 120

Clusters included in this Subclass

CLUSTER: HA.3.105

CLUSTER: HA.4.18

CLUSTER: HA.4.81

CLUSTER: HA.5.10

CLUSTER: HA.6.13

CLUSTER: HA.6.49

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