Information on SUBCLASS 5.2.3 |
Subclass Accession number: 7929
Subclass: 5.2.3 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 8.2 +/- 12.5 Average RMSD (Å) : 0.487 +/- 0.146 Consensus geometry
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Consensus Sequence: | XXpXpXppX |
(φψ)-conformation: | bbpaalabb |
Pattern: | x | x | [adnt] | x | [CDENSTW] | [egkq] | [DEKRT] | [ehns] | x | [gily] |
Conservation: | -1.347 | -0.352 | 1.204 | -0.996 | -0.128 | 0.462 | 1.639 | 0.854 | -0.470 | -0.867 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ab4_*_145 | 1ab4 | - | 146 | 155 | VDNYDGTEKI | EE-TTSSSEE | bxxaavabbb |
1ayx_*_205 | 1ayx | - | 205 | 214 | GFDLWEENQG | EE-TTS--EE | bxxaavabbe |
1f6w_A_66 | 1f6w | A | 66 | 75 | QATITQDSTY | EE-TTSSSEE | bxxaalabbb |
1iqq_A_161 | 1iqq | A | 170 | 179 | CSDKSGEHFI | EE-TTSSSEE | bbxaavabxb |
1l1l_A_402 | 1l1l | A | 404 | 413 | GTNPCGEISL | EE-TT--SEE | bbxaavabxb |
1nzi_A_148 | 1nzi | A | 148 | 157 | FLHDDMKNCG | EE-TTSS-EE | bxxaavabbb |
1oan_A_337 | 1oan | A | 339 | 348 | IMDLEKRHVL | EE-TTSSSEE | bxbaalaxba |
1rfn_B_115 | 1rfn | B | 116 | 125 | RLAENQKSCE | EE-TTSSSEE | bxxaaUaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | L - 208 |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | W - 209 |
1ayx_*_205 | 1ayx | * | TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | E - 210 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ayx_*_205 | 1ayx | * | NULENZYME ACTIVE SITE AND TWO CATALYTIC CARBOXYLATES. | E - 210 |
1oan_A_337 | 1oan | A | AC1NA BINDING SITE FOR CHAIN A | H - 346 |
Clusters included in this Subclass |
CLUSTER: HA.5.45 |
CLUSTER: HA.7.11 |