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Information on SUBCLASS 5.3.1
Subclass Accession number: 7931
Subclass: 5.3.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 18.0 +/- 19.7
Average RMSD (Å) : 0.642 +/- 0.427

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: ppXXpXXXh
(φψ)-conformation: bpaaalpbb
Pattern: xx[acdsv]x[adens]xx[NST][DEGKNQRS]xxx[agv]x[CGKLV]
Conservation:-0.750-0.661-0.346-0.2821.268-0.603-0.8832.6060.191-0.730-1.210-0.1161.0280.3780.108
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a06_*_341a06   -3549ILAEDKRTQKLVAIKEEEEETTT--EEEEExxbbxaaavxxbbbb
1apm_E_551apm   E5872MLVKHKESGNHYAMKEEEEETTT--EEEEEbxbbxaaavxxbbbx
1cm8_A_411cm8   A4256CSAVDGRTGAKVAIKEEEEETTT--EEEEEbbbbxaaagxxbbbb
1cpy_*_3671cpy   -367381RNWTASITDEVAGEVEEEE-TTT-SEEEEEbxbxxaaalbpabbx
1dp4_A_3761dp4   A378392LWDMDPETGAFRVVLEEEE-TTT--EEEEEbbbxxaaavxbbxab
1h1w_A_951h1w   A97111VLARELATSREYAIKEEEEETTT--EEEEEbxbbxaaavxbbxxx
1h8d_H_1981h8d   H199213FVMKSPFNNRWYQMGEEEE-TTT--EEEEEbbbbpaaalbxbxab
1ia8_A_221ia8   A2438QLAVNRVTEEAVAVKEEEEETTT--EEEEEbxbbxaaavxbbbbx
1inp_*_1961inp   -205219FVSQDLHTRRWKGQCEEEE-TTT--EEEEEbabbxaaaUxxbbbb
1jks_A_251jks   A2842KKCREKSTGLQYAAKEEEEETTT--EEEEEbxbbxaaavxxbbxb
1mq4_A_1461mq4   A148162YLAREKQSKFILALKEEEEETTT--EEEEEbxbbxaaavxxbbbx
1pme_*_391pme   -4054CSAYDNVNKVRVAIKEEEEETTT-SEEEEEbxbbxaaalbxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 41
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 54
1cm8_A_411cm8   A     MGMAGNESIUM ION K - 56
1cm8_A_411cm8   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER K - 56
1cpy_*_3671cpy   *     NAGN-ACETYL-D-GLUCOSAMINE N - 368
1cpy_*_3671cpy   *     NAGN-ACETYL-D-GLUCOSAMINE V - 377
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 95
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 96
1h1w_A_951h1w   A     GOLGLYCEROL L - 102
1h1w_A_951h1w   A     GOLGLYCEROL A - 103
1h1w_A_951h1w   A     GOLGLYCEROL T - 104
1h1w_A_951h1w   A     GOLGLYCEROL S - 105
1h1w_A_951h1w   A     GOLGLYCEROL R - 106
1h1w_A_951h1w   A     GOLGLYCEROL E - 107
1h1w_A_951h1w   A     GOLGLYCEROL Y - 108
1h1w_A_951h1w   A     GOLGLYCEROL A - 109
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 109
1h1w_A_951h1w   A     GOLGLYCEROL K - 111
1h1w_A_951h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 111
1h1w_A_951h1w   A     GOLGLYCEROL I - 112
1h1w_A_951h1w   A     GOLGLYCEROL L - 113
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE V - 147
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE A - 160
1mq4_A_1461mq4   A     MGMAGNESIUM ION K - 162
1mq4_A_1461mq4   A     ADPADENOSINE-5'-DIPHOSPHATE K - 162
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE V - 39
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE V - 51
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE A - 52
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE I - 53
1pme_*_391pme   *     5774-[5-(4-FLUORO-PHENYL)-2-[4-METHANESULFINYL-PHENYL]-3H -IMIDAZOL-4-YL]-PYRIDINE K - 54
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h1w_A_951h1w   A AC7GOL BINDING SITE FOR CHAIN AS - 105
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AR - 106
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AE - 107
1h1w_A_951h1w   A AC5GOL BINDING SITE FOR CHAIN AY - 108
1h1w_A_951h1w   A BC6ATP BINDING SITE FOR CHAIN AA - 109
1h1w_A_951h1w   A AC8GOL BINDING SITE FOR CHAIN AK - 111

Clusters included in this Subclass
CLUSTER: HA.6.12