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Information on SUBCLASS 5.3.2
Subclass Accession number: 7932
Subclass: 5.3.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 16.7 +/- 18.2
Average RMSD (Å) : 0.300 +/- 0.095

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XcXXpXpXX
(φψ)-conformation: bbaaalpbb
Pattern: [AFITV]x[cdgn][afklt]x[cdnsty][egn][dknrt]xx
Conservation:1.176-1.2560.737-0.508-0.166-0.2161.3760.956-1.328-0.771
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cb8_A_6671cb8   A672681IRDLKTGKTNEEETTT--EEbbxaaavxbx
1d02_A_841d02   A8695IENTETHKILEEETTT--EEbbxaaavxbb
1ghp_A_431ghp   A4857ALDTKSGKEVEEETTT--EEbbxaaavxbb
1go3_E_1271go3   E127136IIGKETGKVLEEETTT--EExbxaaavxbb
1k32_A_3841k32   A389398IYDYRTGKAEEEETTT--EEbbxaaavxbb
1lbv_A_1121lbv   A117126VYNLATGDEYEEETTT--EEbbxaaavxbb
1lci_*_401lci   -4251FTDAHIEVNIEEETTT--EEbbxaaavxbb
1mfo_A_421mfo   A4857AANLQSGRRIEEETTT--EEbbxaaavxbb
1mk0_A_41mk0   A817IKNTLNNKVYEEETTT--EEbbxaaavxbb
1nui_A_341nui   A3443TFCYVCEKWTEEETTT--EEbbbaaavbbb
1pfq_A_751pfq   A7887VFNAEYGNSSEEETTT--EEbbxaaavxbb
1umw_A_5301umw   A532541INFFQDHTKLEEETTT--EEbbxaaavxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1mk0_A_41mk0   A     CITCITRIC ACID Y - 6
1mk0_A_41mk0   A     CITCITRIC ACID Y - 17
1mk0_A_41mk0   A     CITCITRIC ACID V - 18
1mk0_A_41mk0   A     CITCITRIC ACID G - 19
1mk0_A_41mk0   A     CITCITRIC ACID S - 20
1mk0_A_41mk0   A     CITCITRIC ACID A - 21
1nui_A_341nui   A     ZNZINC ION C - 36
1nui_A_341nui   A     ZNZINC ION V - 38
1nui_A_341nui   A     ZNZINC ION C - 39
1nui_A_341nui   A     ZNZINC ION E - 40
1nui_A_341nui   A     ZNZINC ION K - 41
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE V - 78
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE F - 79
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE N - 80
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 83
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE N - 85
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE S - 86
1pfq_A_751pfq   A     NAGN-ACETYL-D-GLUCOSAMINE S - 87
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE N - 533
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE F - 534
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE F - 535
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE D - 537
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE H - 538
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE T - 539
1umw_A_5301umw   A     TPOPHOSPHOTHREONINE K - 540

Clusters included in this Subclass
CLUSTER: HA.5.26