ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.3.3

Subclass Accession number: 7933
Subclass: 5.3.3

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 13.3 +/- 20.0
Average RMSD (Å) : 0.833 +/- 0.462

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	pXhXXXpXh
(φψ)-conformation:	bpaaalpbb

Pattern:	[FG]	[RS]	[FMV]	[ADV]	x	x	[DHY]	[CN]	[GIL]	[DGT]	[CS]	x	[EK]	[LTV]	[MY]
Conservation:	0.095	0.099	-0.027	-1.149	-1.047	-1.047	0.177	1.184	-1.352	-0.639	1.788	-0.435	1.395	-0.231	1.188

Loops included in this Subclass

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 395
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 396
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 397
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 398
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 399
1dp4_A_388	1dp4	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 400
1ma3_A_119	1ma3	A	ZNZINC ION	C - 126
1ma3_A_119	1ma3	A	ZNZINC ION	L - 127
1ma3_A_119	1ma3	A	ZNZINC ION	D - 128
1ma3_A_119	1ma3	A	ZNZINC ION	C - 129
1ma3_A_119	1ma3	A	ZNZINC ION	H - 130
1ma3_A_119	1ma3	A	ZNZINC ION	E - 131
1ma3_A_119	1ma3	A	ZNZINC ION	Y - 133
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	C - 143
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	I - 144
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	G - 145
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	C - 146
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	G - 147
1q1a_A_136	1q1a	A	ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS	K - 148

Clusters included in this Subclass