Information on SUBCLASS 5.4.3 |
Subclass Accession number: 7938
Subclass: 5.4.3 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 9.5 +/- 10.3 Average RMSD (Å) : 1.233 +/- 0.404 Consensus geometry
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Consensus Sequence: | XXXXpGXpX |
(φψ)-conformation: | bppaalpbb |
Pattern: | [IKV] | [PTV] | [ADV] | [AKS] | [DNT] | [G] | [DTV] | [HK] | [LTY] | x | x | x | x | x |
Conservation: | -0.291 | -0.216 | -0.670 | 0.012 | 0.315 | 3.119 | -0.443 | 0.831 | -0.367 | -0.746 | -0.064 | -0.670 | -0.746 | -0.064 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b5e_A_25 | 1b5e | A | 25 | 38 | VVDKTGVKTIEIIG | EE-TTS-EEEEEEE | bxxaavxxbbbbxv |
1cv8_*_156 | 1cv8 | - | 157 | 170 | IPVSNGDHYQWYSS | EE-TTS-EEEEEEE | xwbaavxbbxxabb |
1odm_A_201 | 1odm | A | 201 | 214 | KTAADGTKLSFEWH | EE-TTS-EEEEEEE | bbxaavxxbabxpb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b5e_A_25 | 1b5e | A | DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | D - 27 |
1b5e_A_25 | 1b5e | A | DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE | K - 28 |
1cv8_*_156 | 1cv8 | * | E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE | Y - 168 |
1odm_A_201 | 1odm | A | ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE | F - 211 |
1odm_A_201 | 1odm | A | FE2FE (II) ION | F - 211 |
1odm_A_201 | 1odm | A | ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE | H - 214 |
1odm_A_201 | 1odm | A | FE2FE (II) ION | H - 214 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1odm_A_201 | 1odm | A | AC5FE2 BINDING SITE FOR CHAIN A | H - 214 |
Clusters included in this Subclass |
CLUSTER: HA.4.141 |