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Information on SUBCLASS 5.4.3
Subclass Accession number: 7938
Subclass: 5.4.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 9.5 +/- 10.3
Average RMSD (Å) : 1.233 +/- 0.404

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXXpGXpX
(φψ)-conformation: bppaalpbb
Pattern: [IKV][PTV][ADV][AKS][DNT][G][DTV][HK][LTY]xxxxx
Conservation:-0.291-0.216-0.6700.0120.3153.119-0.4430.831-0.367-0.746-0.064-0.670-0.746-0.064
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5e_A_251b5e   A2538VVDKTGVKTIEIIGEE-TTS-EEEEEEEbxxaavxxbbbbxv
1cv8_*_1561cv8   -157170IPVSNGDHYQWYSSEE-TTS-EEEEEEExwbaavxbbxxabb
1odm_A_2011odm   A201214KTAADGTKLSFEWHEE-TTS-EEEEEEEbbxaavxxbabxpb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b5e_A_251b5e   A     DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE D - 27
1b5e_A_251b5e   A     DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE K - 28
1cv8_*_1561cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE Y - 168
1odm_A_2011odm   A     ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE F - 211
1odm_A_2011odm   A     FE2FE (II) ION F - 211
1odm_A_2011odm   A     ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE H - 214
1odm_A_2011odm   A     FE2FE (II) ION H - 214
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1odm_A_2011odm   A AC5FE2 BINDING SITE FOR CHAIN AH - 214

Clusters included in this Subclass
CLUSTER: HA.4.141