Information on SUBCLASS 5.23.1 |
Subclass Accession number: 7961
Subclass: 5.23.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 9.1 +/- 17.4 Average RMSD (Å) : 0.933 +/- 0.252 Consensus geometry
|
Consensus Sequence: | XpXXXXpXh |
(φψ)-conformation: | bbpaapabb |
Pattern: | x | [KY] | [DGS] | x | x | [DSV] | [DS] | x | [CIV] | [MY] | x |
Conservation: | -0.791 | 0.739 | 0.248 | -0.791 | -1.252 | -0.906 | 1.140 | -0.675 | 0.825 | 1.791 | -0.329 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1abr_B_229 | 1abr | B | 229 | 239 | IYSLYDDMVMD | EEETTTTEEEE | bxbaaxabbxb |
1j71_A_278 | 1j71 | A | 279 | 289 | LKDSDSSICYF | EE-SSSS-EEE | bbxaaxaxbbx |
1q44_A_29 | 1q44 | A | 30 | 40 | EKGWLVSEIYE | EE-SSSSEEEE | bxxaababbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | Y - 230 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | S - 231 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | L - 232 |
1abr_B_229 | 1abr | B | NAGN-ACETYL-D-GLUCOSAMINE | Y - 233 |
1q44_A_29 | 1q44 | A | MLAMALONIC ACID | L - 34 |
Clusters included in this Subclass |
CLUSTER: HA.5.62 |