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Information on SUBCLASS 5.23.1
Subclass Accession number: 7961
Subclass: 5.23.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 9.1 +/- 17.4
Average RMSD (Å) : 0.933 +/- 0.252

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XpXXXXpXh
(φψ)-conformation: bbpaapabb
Pattern: x[KY][DGS]xx[DSV][DS]x[CIV][MY]x
Conservation:-0.7910.7390.248-0.791-1.252-0.9061.140-0.6750.8251.791-0.329
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1abr_B_2291abr   B229239IYSLYDDMVMDEEETTTTEEEEbxbaaxabbxb
1j71_A_2781j71   A279289LKDSDSSICYFEE-SSSS-EEEbbxaaxaxbbx
1q44_A_291q44   A3040EKGWLVSEIYEEE-SSSSEEEEbxxaababbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE Y - 230
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE S - 231
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE L - 232
1abr_B_2291abr   B     NAGN-ACETYL-D-GLUCOSAMINE Y - 233
1q44_A_291q44   A     MLAMALONIC ACID L - 34

Clusters included in this Subclass
CLUSTER: HA.5.62