ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.4.1

Subclass Accession number: 7972
Subclass: 6.4.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 26.7 +/- 31.9
Average RMSD (Å) : 0.567 +/- 0.301

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XhphppGXXh
(φψ)-conformation:	bbpaaalpbb

Pattern:	[AFILV]	[DKS]	[ehksw]	[IVW]	[DHNQ]	[LPV]	[DEKT]	[NST]	[GQ]	x	[PRT]	[FIV]	[ERST]
Conservation:	-0.468	0.144	-2.017	0.298	0.422	-0.458	-0.158	1.035	1.850	-1.289	0.204	0.889	-0.451

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1flg_A_371	1flg	A	371	383	ASHIDLKTGRPVE	EEEE-TTT--EEE	babbxaaavxpbx
1g72_A_351	1g72	A	351	363	FKKVDLKTGTPVR	EEEE-TTT-SEEE	baebxaaavbxxx
1h4i_A_358	1h4i	A	358	370	FKSVDLKTGQPVR	EEEE-TTT--EEE	babbxaaavxxxx
1lrw_A_358	1lrw	A	358	370	VKEVQLDTGLPVR	EEEE-TTT--EEE	babbxaaavxxxx
1lw3_A_269	1lw3	A	270	282	LSWIHPESQATIT	EEEE-TTT--EEE	xabbxaaavxbbb
1pqh_A_43	1pqh	A	44	56	IDIWNVTNGKRFS	EEEEETTT--EEE	bbbbxaaavxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1pqh_A_43	1pqh	A	MLAMALONIC ACID	W - 47
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	N - 48
1pqh_A_43	1pqh	A	MLAMALONIC ACID	V - 49
1pqh_A_43	1pqh	A	MLAMALONIC ACID	T - 50
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	N - 51
1pqh_A_43	1pqh	A	MLAMALONIC ACID	N - 51
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	G - 52
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	K - 53
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	R - 54
1pqh_A_43	1pqh	A	MLAMALONIC ACID	R - 54
1pqh_A_43	1pqh	A	CSXS-OXY CYSTEINE	F - 55
1pqh_A_43	1pqh	A	MLAMALONIC ACID	F - 55
1pqh_A_43	1pqh	A	MLAMALONIC ACID	S - 56
1pqh_A_43	1pqh	A	MLAMALONIC ACID	T - 57
1pqh_A_43	1pqh	A	MLAMALONIC ACID	Y - 58

Clusters included in this Subclass

CLUSTER: HA.6.29