Information on SUBCLASS 8.8.1 |
Subclass Accession number: 8015
Subclass: 8.8.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 7.6 +/- 10.3 Average RMSD (Å) : 1.233 +/- 0.416 Consensus geometry
|
Consensus Sequence: | XpXXXpXXXXXh |
(φψ)-conformation: | bbabapaaapbb |
Pattern: | x | [AFV] | x | x | [CTY] | [EF] | [ST] | x | [GS] | x | [DHK] | x | [AIK] | x | [AD] | x | [FLP] | [AGV] | x | [FLV] | x | x |
Conservation: | -0.500 | -0.200 | 0.100 | 0.288 | 0.250 | 0.636 | 2.755 | 0.550 | 1.893 | -0.951 | 0.550 | -1.251 | -0.951 | -1.101 | 0.683 | -0.650 | -0.951 | -0.200 | -0.500 | 0.700 | -0.050 | -1.101 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fxx_A_10 | 1fxx | A | 12 | 33 | LFHDYETFGTHPALDRPAQFAA | EEEEEEESSS-TTTS-EEEEEE | bxbbbbbabaxaaaxbxabbbb |
1lbv_A_98 | 1lbv | A | 98 | 119 | SVSLCFSYSDKLKDAFFGYVYN | EEEEEEESSSBGGGEEEEEEEE | bxbbbxbabaxaaapabbbbbx |
2kfn_A_352 | 2kfn | A | 352 | 373 | FAFDTETDSLDNISANLVGLSF | EEEEEEES-S-TTT--EEEEEE | bxbbbbbabaxaaaxbxabbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fxx_A_10 | 1fxx | A | MGMAGNESIUM ION | D - 15 |
1fxx_A_10 | 1fxx | A | MGMAGNESIUM ION | Y - 16 |
2kfn_A_352 | 2kfn | A | ZNZINC ION | D - 355 |
2kfn_A_352 | 2kfn | A | MNMANGANESE (II) ION | D - 355 |
2kfn_A_352 | 2kfn | A | SSULFUR ATOM | D - 355 |
2kfn_A_352 | 2kfn | A | ZNZINC ION | T - 356 |
2kfn_A_352 | 2kfn | A | MNMANGANESE (II) ION | T - 356 |
2kfn_A_352 | 2kfn | A | SSULFUR ATOM | T - 356 |
2kfn_A_352 | 2kfn | A | ZNZINC ION | E - 357 |
2kfn_A_352 | 2kfn | A | MNMANGANESE (II) ION | E - 357 |
2kfn_A_352 | 2kfn | A | SSULFUR ATOM | E - 357 |
2kfn_A_352 | 2kfn | A | ZNZINC ION | S - 372 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
2kfn_A_352 | 2kfn | A | EXOEXONUCLEASE ACTIVE SITE. | D - 355 |
Clusters included in this Subclass |
CLUSTER: HA.8.14 |