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Information on SUBCLASS 8.8.1
Subclass Accession number: 8015
Subclass: 8.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 7.6 +/- 10.3
Average RMSD (Å) : 1.233 +/- 0.416

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XpXXXpXXXXXh
(φψ)-conformation: bbabapaaapbb
Pattern: x[AFV]xx[CTY][EF][ST]x[GS]x[DHK]x[AIK]x[AD]x[FLP][AGV]x[FLV]xx
Conservation:-0.500-0.2000.1000.2880.2500.6362.7550.5501.893-0.9510.550-1.251-0.951-1.1010.683-0.650-0.951-0.200-0.5000.700-0.050-1.101
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fxx_A_101fxx   A1233LFHDYETFGTHPALDRPAQFAAEEEEEEESSS-TTTS-EEEEEEbxbbbbbabaxaaaxbxabbbb
1lbv_A_981lbv   A98119SVSLCFSYSDKLKDAFFGYVYNEEEEEEESSSBGGGEEEEEEEEbxbbbxbabaxaaapabbbbbx
2kfn_A_3522kfn   A352373FAFDTETDSLDNISANLVGLSFEEEEEEES-S-TTT--EEEEEEbxbbbbbabaxaaaxbxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fxx_A_101fxx   A     MGMAGNESIUM ION D - 15
1fxx_A_101fxx   A     MGMAGNESIUM ION Y - 16
2kfn_A_3522kfn   A     ZNZINC ION D - 355
2kfn_A_3522kfn   A     MNMANGANESE (II) ION D - 355
2kfn_A_3522kfn   A     SSULFUR ATOM D - 355
2kfn_A_3522kfn   A     ZNZINC ION T - 356
2kfn_A_3522kfn   A     MNMANGANESE (II) ION T - 356
2kfn_A_3522kfn   A     SSULFUR ATOM T - 356
2kfn_A_3522kfn   A     ZNZINC ION E - 357
2kfn_A_3522kfn   A     MNMANGANESE (II) ION E - 357
2kfn_A_3522kfn   A     SSULFUR ATOM E - 357
2kfn_A_3522kfn   A     ZNZINC ION S - 372
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2kfn_A_3522kfn   A EXOEXONUCLEASE ACTIVE SITE.D - 355

Clusters included in this Subclass
CLUSTER: HA.8.14