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Information on SUBCLASS 8.9.1
Subclass Accession number: 8016
Subclass: 8.9.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 43.1 +/- 17.9
Average RMSD (Å) : 0.367 +/- 0.153

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: hhGXpCpXhDXI
(φψ)-conformation: bbpapabaapba
Pattern: [LPY][VY][PS][AS][RS][ILV][VW][G][KP][HT][C][DE][GS][GL][D]x[I][V][ER][DR][CTY][DWY][LV][P]
Conservation:-1.232-0.276-0.074-0.250-0.624-0.181-0.1561.396-0.184-0.4332.8150.370-0.190-1.2321.396-1.2320.4500.450-0.244-0.618-0.864-0.706-0.2501.869
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d7k_B_3501d7k   B350373YYSSSIWGPTCDGLDRIVERCDLPEEEEEEE-SSS-TT-EEEEEEEEEbbxbbbbxaxabaaxbababbbbp
1f3t_A_3501f3t   A350373LYPSSVWGPTCDGLDQIVERYYLPEEEEEEE-SSS-TT-EEEEEEEEEbbwbbbbxaxaxaaxbababbxbx
1hkv_A_3651hkv   A365388PVPARLVGKHCESGDIIVRDTWVPEEEEEEE-SSSSTT-EEEEEEEEExbwbbxbbaxabaaxbababbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d7k_B_3501d7k   B     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) C - 360
1d7k_B_3501d7k   B     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) D - 361
1f3t_A_3501f3t   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 360
1f3t_A_3501f3t   A     PUT1,4-DIAMINOBUTANE C - 360
1f3t_A_3501f3t   A     PLPPYRIDOXAL-5'-PHOSPHATE D - 361
1f3t_A_3501f3t   A     PUT1,4-DIAMINOBUTANE D - 361
1f3t_A_3501f3t   A     PUT1,4-DIAMINOBUTANE G - 362
1hkv_A_3651hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 375
1hkv_A_3651hkv   A     LYSLYSINE C - 375
1hkv_A_3651hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 376
1hkv_A_3651hkv   A     LYSLYSINE E - 376
1hkv_A_3651hkv   A     LYSLYSINE S - 377
1hkv_A_3651hkv   A     LYSLYSINE G - 378
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkv_A_3651hkv   A PLBPLP BINDING SITE FOR CHAIN BC - 375
1hkv_A_3651hkv   A LYBLYS BINDING SITE FOR CHAIN BE - 376
1hkv_A_3651hkv   A LYBLYS BINDING SITE FOR CHAIN BS - 377

Clusters included in this Subclass
CLUSTER: HA.7.52