Information on SUBCLASS 8.9.1 |
Subclass Accession number: 8016
Subclass: 8.9.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 43.1 +/- 17.9 Average RMSD (Å) : 0.367 +/- 0.153 Consensus geometry
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Consensus Sequence: | hhGXpCpXhDXI |
(φψ)-conformation: | bbpapabaapba |
Pattern: | [LPY] | [VY] | [PS] | [AS] | [RS] | [ILV] | [VW] | [G] | [KP] | [HT] | [C] | [DE] | [GS] | [GL] | [D] | x | [I] | [V] | [ER] | [DR] | [CTY] | [DWY] | [LV] | [P] |
Conservation: | -1.232 | -0.276 | -0.074 | -0.250 | -0.624 | -0.181 | -0.156 | 1.396 | -0.184 | -0.433 | 2.815 | 0.370 | -0.190 | -1.232 | 1.396 | -1.232 | 0.450 | 0.450 | -0.244 | -0.618 | -0.864 | -0.706 | -0.250 | 1.869 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1d7k_B_350 | 1d7k | B | 350 | 373 | YYSSSIWGPTCDGLDRIVERCDLP | EEEEEEE-SSS-TT-EEEEEEEEE | bbxbbbbxaxabaaxbababbbbp |
1f3t_A_350 | 1f3t | A | 350 | 373 | LYPSSVWGPTCDGLDQIVERYYLP | EEEEEEE-SSS-TT-EEEEEEEEE | bbwbbbbxaxaxaaxbababbxbx |
1hkv_A_365 | 1hkv | A | 365 | 388 | PVPARLVGKHCESGDIIVRDTWVP | EEEEEEE-SSSSTT-EEEEEEEEE | xbwbbxbbaxabaaxbababbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d7k_B_350 | 1d7k | B | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | C - 360 |
1d7k_B_350 | 1d7k | B | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | D - 361 |
1f3t_A_350 | 1f3t | A | PLPPYRIDOXAL-5'-PHOSPHATE | C - 360 |
1f3t_A_350 | 1f3t | A | PUT1,4-DIAMINOBUTANE | C - 360 |
1f3t_A_350 | 1f3t | A | PLPPYRIDOXAL-5'-PHOSPHATE | D - 361 |
1f3t_A_350 | 1f3t | A | PUT1,4-DIAMINOBUTANE | D - 361 |
1f3t_A_350 | 1f3t | A | PUT1,4-DIAMINOBUTANE | G - 362 |
1hkv_A_365 | 1hkv | A | PLPPYRIDOXAL-5'-PHOSPHATE | C - 375 |
1hkv_A_365 | 1hkv | A | LYSLYSINE | C - 375 |
1hkv_A_365 | 1hkv | A | PLPPYRIDOXAL-5'-PHOSPHATE | E - 376 |
1hkv_A_365 | 1hkv | A | LYSLYSINE | E - 376 |
1hkv_A_365 | 1hkv | A | LYSLYSINE | S - 377 |
1hkv_A_365 | 1hkv | A | LYSLYSINE | G - 378 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1hkv_A_365 | 1hkv | A | PLBPLP BINDING SITE FOR CHAIN B | C - 375 |
1hkv_A_365 | 1hkv | A | LYBLYS BINDING SITE FOR CHAIN B | E - 376 |
1hkv_A_365 | 1hkv | A | LYBLYS BINDING SITE FOR CHAIN B | S - 377 |
Clusters included in this Subclass |
CLUSTER: HA.7.52 |