Logo
Information on SUBCLASS 9.8.1
Subclass Accession number: 8028
Subclass: 9.8.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 34.6 +/- 29.3
Average RMSD (Å) : 0.400 +/- 0.200

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXpchcXXIXXXP
(φψ)-conformation: bbaaabaabblpp
Pattern: [ARS][av][EN][DGK][LV][DN][PQS][AT][IV][dqs][AGR][al][P]
Conservation:-0.554-0.7530.453-0.6530.1930.784-0.4670.1580.733-1.073-0.653-0.7872.619
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1llp_*_1801llp   -180192AVNDVDPTVQGLPEESSSSTT-S-EEbbaaaxaabbvxx
1lyc_A_1871lyc   A187199SQEGLNSAIFRSPEESSS-GGGTTEEbbaaabaabpvxx
1mn1_*_1771mn1   -177189RANKVDQTIDAAPEESSSSTT---EEbbaaabaabblxx
1qpa_A_1801qpa   A180192AANDVDPTISGLPEESSSSTT-S-EEbbaaaxaabbvxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1llp_*_1801llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 180
1llp_*_1801llp   *     CACALCIUM ION A - 180
1llp_*_1801llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 181
1llp_*_1801llp   *     CACALCIUM ION V - 181
1llp_*_1801llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 182
1llp_*_1801llp   *     CACALCIUM ION N - 182
1llp_*_1801llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE D - 183
1llp_*_1801llp   *     CACALCIUM ION D - 183
1llp_*_1801llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE V - 184
1llp_*_1801llp   *     CACALCIUM ION V - 184
1llp_*_1801llp   *     MANALPHA-D-MANNOSE V - 188
1llp_*_1801llp   *     MANALPHA-D-MANNOSE L - 191
1lyc_A_1871lyc   A     CACALCIUM ION S - 187
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 187
1lyc_A_1871lyc   A     CACALCIUM ION Q - 188
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 188
1lyc_A_1871lyc   A     CACALCIUM ION E - 189
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 189
1lyc_A_1871lyc   A     CACALCIUM ION G - 190
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 190
1lyc_A_1871lyc   A     CACALCIUM ION L - 191
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 191
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 192
1lyc_A_1871lyc   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 197
1mn1_*_1771mn1   *     CACALCIUM ION R - 177
1mn1_*_1771mn1   *     HEMPROTOPORPHYRIN IX CONTAINING FE R - 177
1mn1_*_1771mn1   *     CACALCIUM ION A - 178
1mn1_*_1771mn1   *     HEMPROTOPORPHYRIN IX CONTAINING FE A - 178
1mn1_*_1771mn1   *     CACALCIUM ION N - 179
1mn1_*_1771mn1   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 179
1mn1_*_1771mn1   *     CACALCIUM ION K - 180
1mn1_*_1771mn1   *     HEMPROTOPORPHYRIN IX CONTAINING FE K - 180
1qpa_A_1801qpa   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 181
1qpa_A_1801qpa   A     CACALCIUM ION A - 181

Clusters included in this Subclass
CLUSTER: HA.8.11