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Information on SUBCLASS 12.4.1
Subclass Accession number: 8044
Subclass: 12.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 35.0 +/- 25.2
Average RMSD (Å) : 0.560 +/- 0.270

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: hhGXHpXXXXpXpXQX
(φψ)-conformation: bblpapaabpbaapbb
Pattern: [EQR][LV][ILVW][FL][G][akr][HN][KNS][IKL][fkt][eqr][enr][EN][ENP][DST][AEKR][Q][fhiv]
Conservation:0.2360.364-0.5160.2262.231-0.9021.738-0.065-0.545-1.028-0.899-0.9820.509-0.226-0.136-0.6121.657-1.050
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ao5_A_651ao5   A6582EVWLGKNKLFQEEPSAQHEEEES--BSSS--SS-EEbbbbvxaxaabxbaaxbb
1bqy_A_651bqy   A6582QLLFGVHSKKILNEDEQTEEEES-S-SSS--TT-EEbbbbvxaxaabxxaaxbb
1orf_A_641orf   A6481QVILGAHSITREEPTKQIEEEES-SBSSS--TT-EEbbbblxaxaapxbaaxbx
1ppf_E_651ppf   E6582RVVLGAHNLSRREPTRQVEEEES-SBTTS--TT-EExbbbvxabaabxbaaxbb
2pka_A_642pka   A6481EVWLGRHNLFENENTAQFEEEES-S-TTS--TT-EEbbbbvbabaabxbaaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ppf_E_651ppf   E     NAGN-ACETYL-D-GLUCOSAMINE R - 65
1ppf_E_651ppf   E     FUCFUCOSE R - 65
1ppf_E_651ppf   E     NAGN-ACETYL-D-GLUCOSAMINE R - 76
1ppf_E_651ppf   E     NAGN-ACETYL-D-GLUCOSAMINE V - 82
1ppf_E_651ppf   E     FUCFUCOSE V - 82
1ppf_E_651ppf   E     NAGN-ACETYL-D-GLUCOSAMINE F - 83
1ppf_E_651ppf   E     FUCFUCOSE F - 83

Clusters included in this Subclass
CLUSTER: HA.11.9