Information on SUBCLASS 12.4.1 |
Subclass Accession number: 8044
Subclass: 12.4.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 35.0 +/- 25.2 Average RMSD (Å) : 0.560 +/- 0.270 Consensus geometry
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Consensus Sequence: | hhGXHpXXXXpXpXQX |
(φψ)-conformation: | bblpapaabpbaapbb |
Pattern: | [EQR] | [LV] | [ILVW] | [FL] | [G] | [akr] | [HN] | [KNS] | [IKL] | [fkt] | [eqr] | [enr] | [EN] | [ENP] | [DST] | [AEKR] | [Q] | [fhiv] |
Conservation: | 0.236 | 0.364 | -0.516 | 0.226 | 2.231 | -0.902 | 1.738 | -0.065 | -0.545 | -1.028 | -0.899 | -0.982 | 0.509 | -0.226 | -0.136 | -0.612 | 1.657 | -1.050 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ao5_A_65 | 1ao5 | A | 65 | 82 | EVWLGKNKLFQEEPSAQH | EEEES--BSSS--SS-EE | bbbbvxaxaabxbaaxbb |
1bqy_A_65 | 1bqy | A | 65 | 82 | QLLFGVHSKKILNEDEQT | EEEES-S-SSS--TT-EE | bbbbvxaxaabxxaaxbb |
1orf_A_64 | 1orf | A | 64 | 81 | QVILGAHSITREEPTKQI | EEEES-SBSSS--TT-EE | bbbblxaxaapxbaaxbx |
1ppf_E_65 | 1ppf | E | 65 | 82 | RVVLGAHNLSRREPTRQV | EEEES-SBTTS--TT-EE | xbbbvxabaabxbaaxbb |
2pka_A_64 | 2pka | A | 64 | 81 | EVWLGRHNLFENENTAQF | EEEES-S-TTS--TT-EE | bbbbvbabaabxbaaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ppf_E_65 | 1ppf | E | NAGN-ACETYL-D-GLUCOSAMINE | R - 65 |
1ppf_E_65 | 1ppf | E | FUCFUCOSE | R - 65 |
1ppf_E_65 | 1ppf | E | NAGN-ACETYL-D-GLUCOSAMINE | R - 76 |
1ppf_E_65 | 1ppf | E | NAGN-ACETYL-D-GLUCOSAMINE | V - 82 |
1ppf_E_65 | 1ppf | E | FUCFUCOSE | V - 82 |
1ppf_E_65 | 1ppf | E | NAGN-ACETYL-D-GLUCOSAMINE | F - 83 |
1ppf_E_65 | 1ppf | E | FUCFUCOSE | F - 83 |
Clusters included in this Subclass |
CLUSTER: HA.11.9 |