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Information on SUBCLASS 0.1.43
Subclass Accession number: 8105
Subclass: 0.1.43 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.5 +/- 13.0
Average RMSD (Å) : 0.633 +/- 0.153

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XpXp
(φψ)-conformation: aabb
Pattern: xx[GNS][EL]x[FLW]xx[CFL][L][RS]x[DQS][GNV][ER][NTV]
Conservation:-0.929-0.7060.631-0.137-0.9290.743-0.706-0.8180.0742.6370.496-0.7060.297-0.9291.357-0.372
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dcu_A_771dcu   A8499ISNEVFSNCLRSSGRTHHHHHHHHHTTTTEEEaaaaaaaaaaaaabbb
1dlj_A_101dlj   A1025YVGLSLGVLLSLQNEVHHHHHHHHHHTTTSEEaaaaaaaaaaaaabxb
1obd_A_531obd   A5974KLSEFWFKFLSNDVRNHHHHHHHHHTTTT-EEaaaaaaaaaaaaabxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 10
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 11
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 12
1dlj_A_101dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 28
1obd_A_531obd   A     MGMAGNESIUM ION L - 57
1obd_A_531obd   A     MGMAGNESIUM ION T - 58
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE K - 59
1obd_A_531obd   A     MGMAGNESIUM ION S - 61
1obd_A_531obd   A     AMPADENOSINE MONOPHOSPHATE E - 62
1obd_A_531obd   A     MGMAGNESIUM ION F - 65
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_531obd   A AC6MG BINDING SITE FOR CHAIN AS - 61
1obd_A_531obd   A AC7AMP BINDING SITE FOR CHAIN AE - 62
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AR - 73
1obd_A_531obd   A AC4SO4 BINDING SITE FOR CHAIN AN - 74

Clusters included in this Subclass
CLUSTER: HE.5.219