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Information on SUBCLASS 1.1.3
Subclass Accession number: 8131
Subclass: 1.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 26

Average sequence ID (%) : 16.7 +/- 17.2
Average RMSD (Å) : 0.531 +/- 0.176

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXGhX
(φψ)-conformation: aagba
Pattern: x[dekpqrst]x[agklmt]xxx[fgk][afimvy]xx
Conservation:-0.140-0.247-0.5010.079-0.513-0.524-0.4202.8450.487-0.374-0.691
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4m_A_761a4m   A8797VEMKAKEGVVYHHHHHHTTEEEaaaaaaavxab
1e0t_A_171e0t   A2030LAKMLDAGMNVHHHHHHHTEEEaaaaaaagpab
1e9y_B_1441e9y   B145155IPTAFASGVTTHHHHHHTTEEEaaaaaaavbab
1ejx_C_11421ejx   C11431153AEEALVSGVTTHHHHHHTTEEEaaaaaaavxab
1f8m_A_3261f8m   A333343QKELAAMGFKFHHHHHHHTEEEaaaaaaagxab
1gkr_A_751gkr   A7989SESAAVGGITTHHHHHHHTEEEaaaaaaavxab
1gpe_A_2981gpe   A299308PLILEYSGIG.HHHHHHTTEE.aaaaaaavbe.
1gvf_A_2151gvf   A218228VRRTIELGVTKHHHHHHTTEEEaaaaaaagxab
1gyn_A_2711gyn   A274284IKDSVSYGVVKHHHHHHTTEEEaaaaaaagxab
1h5r_A_381h5r   A4151LSTLMLAGIRDHHHHHHTTEEEaaaaaaavbab
1hnn_A_2361hnn   A240250REALVRSGYKVHHHHHHTTEEEaaaaaaavbxx
1igw_B_3301igw   B337347QQQLSDMGYKFHHHHHHHTEEEaaaaaaagxab
1itu_A_1341itu   A137147LRALYQLGMRYHHHHHHTTEEEaaaaaaagxab
1itu_A_521itu   A5262IPKLRAGFVGGHHHHHHTTEEEaaaaaaalxab
1j11_A_281j11   A3545LRWAKQNGFYAHHHHHHTTEEEaaaaaaavxab
1j1u_A_431j1u   A5262MIDLQNAGFDIHHHHHHTTEEEaaaaaaavxxb
1j5s_A_1361j5s   A137147QKLLRDMKVEIHHHHHHTTEEEaaaaaaalxab
1k4g_A_2831k4g   A284293PTRSGRNGQA.HHHHHHHTEE.aaaaaaagxb.
1ndw_A_761ndw   A8797VEMKAKDGVVYHHHHHHTTEEEaaaaaaavxab
1nfg_A_731nfg   A7787TVAAACGGTTTHHHHHHTTEEEaaaaaaavbab
1o9j_A_3471o9j   A357367IESGKKEGAKLHHHHHHHT-EEaaaaaaagxbx
1ogs_A_3571ogs   A367377IITNLLYHVVGHHHHHHTTEEEaaaaaaavxab
1pkl_A_341pkl   A3747LKGLIQSGMSVHHHHHHHTEEEaaaaaaagxab
1req_A_6931req   A693703FDELRKDGAVEHHHHHHTTEEEaaaaaaagxab
1tfr_*_401tfr   -5565VKKAKTLGYTKHHHHHHTTEEEaaaaaaagxab
4ubp_C_1454ubp   C146156VDVALANGITTHHHHHHTTEEEaaaaaaavxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4m_A_761a4m   A     ZNZINC ION R - 101
1a4m_A_761a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE R - 101
1a4m_A_761a4m   A     PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE Y - 102
1gpe_A_2981gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 301
1gvf_A_2151gvf   A     PGCO-PHOSPHOGLYCOLOHYDROXAMATE N - 230
1gvf_A_2151gvf   A     ZNZINC ION N - 230
1gvf_A_2151gvf   A     PGCO-PHOSPHOGLYCOLOHYDROXAMATE V - 231
1gyn_A_2711gyn   A     CDCADMIUM ION N - 286
1h5r_A_381h5r   A     THMTHYMIDINE S - 42
1h5r_A_381h5r   A     THMTHYMIDINE L - 46
1h5r_A_381h5r   A     THMTHYMIDINE I - 55
1igw_B_3301igw   B     HGMERCURY (II) ION F - 336
1igw_B_3301igw   B     HGMERCURY (II) ION Q - 337
1igw_B_3301igw   B     HGMERCURY (II) ION Q - 348
1igw_B_3301igw   B     HGMERCURY (II) ION F - 349
1igw_B_3301igw   B     PYRPYRUVIC ACID F - 349
1igw_B_3301igw   B     HGMERCURY (II) ION I - 350
1itu_A_521itu   A     ZNZINC ION S - 66
1j11_A_281j11   A     EPG2-HYDROXYMETHYL-6-OXIRANYLMETHOXY-TETRAHYDRO-PYRAN-3, 4,5-TRIOL T - 47
1j11_A_281j11   A     EPG2-HYDROXYMETHYL-6-OXIRANYLMETHOXY-TETRAHYDRO-PYRAN-3, 4,5-TRIOL D - 49
1j11_A_281j11   A     EPG2-HYDROXYMETHYL-6-OXIRANYLMETHOXY-TETRAHYDRO-PYRAN-3, 4,5-TRIOL W - 51
1j1u_A_431j1u   A     TYRTYROSINE L - 65
1ndw_A_761ndw   A     FR21-((1R)-1-(HYDROXYMETHYL)-3-PHENYLPROPYL)-1H-IMIDAZOLE -4-CARBOXAMIDE R - 101
1ndw_A_761ndw   A     FR21-((1R)-1-(HYDROXYMETHYL)-3-PHENYLPROPYL)-1H-IMIDAZOLE -4-CARBOXAMIDE Y - 102
1nfg_A_731nfg   A     KCXLYSINE NZ-CARBOXYLIC ACID F - 91
1nfg_A_731nfg   A     ZNZINC ION F - 91
1o9j_A_3471o9j   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 349
1req_A_6931req   A     B12COBALAMIN Y - 705
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvf_A_2151gvf   A AC1PGC BINDING SITE FOR CHAIN AN - 230
1h5r_A_381h5r   A THMTHM BINDING SITE FOR CHAIN DL - 46
1ogs_A_3571ogs   A AC7SO4 BINDING SITE FOR CHAIN AW - 357
1ogs_A_3571ogs   A AC7SO4 BINDING SITE FOR CHAIN AD - 358
1ogs_A_3571ogs   A AC1SO4 BINDING SITE FOR CHAIN AW - 381
1pkl_A_341pkl   A ADPADP SUBSTRATE BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURESR - 49
1pkl_A_341pkl   A ADPADP SUBSTRATE BINDING SITE, BY ANALOGY WITH OTHER CRYSTAL STRUCTURESN - 51

Clusters included in this Subclass
CLUSTER: HE.1.10
CLUSTER: HE.2.18