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PDB code:

Information on SUBCLASS 1.2.3

Subclass Accession number: 8139 Subclass: 1.2.3 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 49 Average sequence ID (%) : 14.1 +/- 16.2 Average RMSD (Å) : 0.469 +/- 0.177 Consensus geometry d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4m_A_126	1a4m	A	141	149	EQAFGIKVR	HHHH--EEE	aaaavbxbb
1agx_*_291	1agx	-	291	298	DDKYGWIA.	HHHHT-EE.	aaaavxbx.
1ak2_*_29	1ak2	-	37	45	AKNFCVCHL	HHHHT-EEE	aaaalbxxb
1b41_A_136	1b41	A	139	147	VQAERTVLV	HHHH--EEE	aaaalbxbb
1bhe_*_136	1bhe	-	141	148	AKVKKLKQ.	HHHHT-EE.	aaaavbbx.
1dp4_A_163	1dp4	A	176	184	RERLNITVN	HHHH--EEE	aaaavxxbx
1ea5_A_133	1ea5	A	136	144	AYTEEVVLV	HHHHT-EEE	aaaalbxbb
1ekq_A_148	1ekq	A	158	166	AQKLNTVIA	HHHHTSEEE	aaaalbbbb
1ems_A_197	1ems	A	212	220	AIENQCYVV	HHHHT-EEE	aaaalbxbb
1erz_A_211	1erz	A	223	231	SYQNGAWSA	HHHHT-EEE	aaaalbxbb
1erz_A_78	1erz	A	84	92	AAELGIGFN	HHHHT-EEE	aaaavbxbb
1f89_A_199	1f89	A	212	220	AVDNQVYVM	HHHHTSEEE	aaaalbxbb
1fui_A_194	1fui	A	198	206	ESWLGMKVQ	HHHH--EEE	aaaavbbbb
1fxp_A_1060	1fxp	A	1071	1079	KEEFGLKIT	HHHH--EEE	aaaavbxbb
1geg_A_112	1geg	A	125	133	FKKEGHGGK	HHHHTS-EE	aaaavbxeb
1h7b_A_416	1h7b	A	431	439	TERTGFAFS	HHHH--EEE	aaaavxxxb
1i39_A_108	1i39	A	115	123	EEITGLRVV	HHHH-SEEE	aaaavbxbb
1itu_A_106	1itu	A	112	120	AFREGKVAS	HHHHT-EEE	aaaavbxpb
1j0a_A_28	1j0a	A	31	39	SREIGADVY	HHHHTSEEE	aaaavbxbb
1jg1_A_104	1jg1	A	110	118	SEIVKTDVY	HHHH-S-EE	aaaavbpbb
1jsc_A_139	1jsc	A	150	158	ARASGKPGV	HHHHSS-EE	aaaavxxxb
1jvw_A_105	1jvw	A	105	113	SRERGKPTT	HHHHTS-EE	aaaavbxbx
1k6w_A_190	1k6w	A	204	212	AQKYDRLID	HHHHT-EEE	aaaalbxbb
1kbl_A_299	1kbl	A	313	321	EKHFRDMQD	HHHHTS-EE	aaaavbpbb
1kpi_A_85	1kpi	A	91	99	VAEYDVNVI	HHHH--EEE	aaaalbxbb
1kqp_A_128	1kqp	A	147	154	GGQEGLLV.	HHHHT-EE.	aaaavbxx.
1m56_A_428	1m56	A	441	447	GKMSGRQ..	HHHHSEE..	aaaavbx..
1mx1_A_1155	1mx1	A	1158	1166	AAHENVVVV	HHHHT-EEE	aaaalbxbb
1mx3_A_211	1mx3	A	212	219	ERALGLQR.	HHHHT-EE.	aaaavbxb.
1n5m_A_136	1n5m	A	139	147	AQVEGAVLV	HHHH--EEE	aaaavxbbb
1n62_B_279	1n62	B	288	296	SIVLGVPVK	HHHHSS-EE	aaaavbxbx
1o60_A_76	1o60	A	85	93	KDTFGVKII	HHHH--EEE	aaaavxxbb
1o63_A_110	1o63	A	117	125	CESKGWHCR	HHHHT--EE	aaaavxxbb
1obr_*_227	1obr	-	241	249	AQTNGYTPQ	HHHH--EEE	aaaavxbxb
1ofg_A_346	1ofg	A	362	370	AARTGRPVN	HHHHSS-EE	aaaavbxbx
1ovm_A_52	1ovm	A	63	71	ARCKGFAAL	HHHHS-EEE	aaaavbbbb
1p0i_A_131	1p0i	A	134	142	ARVERVIVV	HHHH--EEE	aaaalbxbb
1p4c_A_270	1p4c	A	274	282	VAKTGKPVL	HHHH-S-EE	aaaavbpbx
1pfk_A_227	1pfk	A	235	243	EKETGRETR	HHHHSS-EE	aaaavbxbb
1pox_A_146	1pox	A	157	165	AYAHQGVAV	HHHHTSEEE	aaaalbbbb
1pvd_A_51	1pvd	A	62	70	ARIKGMSCI	HHHHS-EEE	aaaagbbbb
1qe3_A_121	1qe3	A	124	132	AAQGEVIVV	HHHHT-EEE	aaaalbxbb
1qlm_A_19	1qlm	A	19	27	AELLNVEVQ	HHHHT-EEE	aaaalbbbb
1zpd_A_50	1zpd	A	61	69	ARAKGAAAA	HHHHS-EEE	aaaagbbbb
2aaa_*_216	2aaa	-	220	228	NKASGVYCV	HHHHTSEEE	aaaavbpbb
2bce_*_128	2bce	-	131	139	ATRGNVIVV	HHHHT-EEE	aaaalbxbb
2fok_A_528	2fok	A	536	544	NHITNCNGA	HHHH--EEE	aaaavxxbb
4pga_A_297	4pga	A	297	304	DDKNDWVV.	HHHHT-EE.	aaaalxbb.
7taa_*_215	7taa	-	220	228	NKAAGVYCI	HHHHTSEEE	aaaavbpbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a4m_A_126	1a4m	A	PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE	C - 153
1a4m_A_126	1a4m	A	PRH6-HYDROXY-1,6-DIHYDRO PURINE NUCLEOSIDE	M - 155
1fxp_A_1060	1fxp	A	PO4PHOSPHATE ION	D - 1081
1geg_A_112	1geg	A	GLCGLUCOSE	Q - 119
1geg_A_112	1geg	A	GLCGLUCOSE	E - 123
1geg_A_112	1geg	A	GLCGLUCOSE	K - 127
1geg_A_112	1geg	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 137
1itu_A_106	1itu	A	ZNZINC ION	E - 125
1itu_A_106	1itu	A	CILCILASTATIN	E - 125
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	W - 104
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	N - 105
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	A - 106
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 120
1jg1_A_104	1jg1	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	E - 121
1jsc_A_139	1jsc	A	TPPTHIAMINE DIPHOSPHATE	E - 139
1k6w_A_190	1k6w	A	FEFE (III) ION	H - 214
1kpi_A_85	1kpi	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	S - 85
1kpi_A_85	1kpi	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 86
1kpi_A_85	1kpi	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	L - 101
1kpi_A_85	1kpi	A	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 102
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	F - 129
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 132
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	N - 133
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	A - 136
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	R - 137
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	R - 139
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	Q - 143
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	Y - 144
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 147
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 148
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	G - 151
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 152
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	L - 153
1kqp_A_128	1kqp	A	ADJNICOTINAMIDE-ADENINE-DINUCLEOTIDE-ADENYLATE INTERMEDIATE	V - 154
1m56_A_428	1m56	A	HEAHEME-A	A - 428
1m56_A_428	1m56	A	CACALCIUM ION	V - 429
1m56_A_428	1m56	A	HEAHEME-A	V - 429
1m56_A_428	1m56	A	HEAHEME-A	I - 432
1m56_A_428	1m56	A	HEAHEME-A	F - 433
1m56_A_428	1m56	A	HEAHEME-A	I - 436
1o60_A_76	1o60	A	MSESELENOMETHIONINE	E - 76
1o60_A_76	1o60	A	MSESELENOMETHIONINE	G - 77
1o60_A_76	1o60	A	MSESELENOMETHIONINE	L - 78
1o60_A_76	1o60	A	MSESELENOMETHIONINE	K - 79
1o60_A_76	1o60	A	MSESELENOMETHIONINE	I - 80
1o60_A_76	1o60	A	MSESELENOMETHIONINE	E - 83
1o60_A_76	1o60	A	MSESELENOMETHIONINE	L - 84
1o60_A_76	1o60	A	MSESELENOMETHIONINE	T - 87
1o60_A_76	1o60	A	MSESELENOMETHIONINE	F - 88
1o63_A_110	1o63	A	MSESELENOMETHIONINE	V - 112
1ovm_A_52	1ovm	A	TPPTHIAMINE DIPHOSPHATE	E - 52
1ovm_A_52	1ovm	A	TPPTHIAMINE DIPHOSPHATE	Y - 57
1ovm_A_52	1ovm	A	TPPTHIAMINE DIPHOSPHATE	T - 74
1p0i_A_131	1p0i	A	GOLGLYCEROL	K - 131
1p0i_A_131	1p0i	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 137
1pvd_A_51	1pvd	A	TPPTHIAMINE DIPHOSPHATE	E - 51
1pvd_A_51	1pvd	A	TPPTHIAMINE DIPHOSPHATE	Y - 56
1pvd_A_51	1pvd	A	TPPTHIAMINE DIPHOSPHATE	T - 73
1zpd_A_50	1zpd	A	DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER	E - 50

Clusters included in this Subclass

CLUSTER: HE.1.4

CLUSTER: HE.2.17

CLUSTER: HE.3.34

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