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Information on SUBCLASS 1.2.5
Subclass Accession number: 8141
Subclass: 1.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 37

Average sequence ID (%) : 18.0 +/- 19.1
Average RMSD (Å) : 0.408 +/- 0.169

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXGhX
(φψ)-conformation: aalbb
Pattern: [acfgilmvwy]x[adegknqrst]x[EGNR][afgiklmtv]x[acilpvy]
Conservation:-0.218-0.209-0.032-0.7142.417-0.530-0.457-0.258
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5c_A_1671a5c   A184191CQQNRLVPHHHTT-EEaaaalbxx
1ado_A_1601ado   A177184CQQNGIVPHHHTT-EEaaaavbxx
1ako_*_441ako   -4754VAKLGYNVHHHTT-EEaaaavbxb
1cbg_*_1111cbg   -124131VLANGMQPHHHTT-EEaaaalbbw
1ccw_A_181ccw   A2734FTNAGFNVHHHTT-EEaaaagxxx
1d3v_A_701d3v   A8794TQKNGTISHHHTT-EEaaaavbxx
1ehw_A_211ehw   A2835FERRGFTLHHHTT-EEaaaavxbx
1eon_A_371eon   A5663AEKHGYIVHHHTT-EEaaaavxxb
1esw_A_1791esw   A203210AEALGIRIHHHTT-EEaaaavbbb
1f2j_A_1701f2j   A187194SQLCGLVPHHHTT-EEaaaavbxx
1fa2_A_711fa2   A8087VKKCGLKIHHHTT-EEaaaavbxb
1fba_A_1601fba   A177184CQSQRIVPHHHTT-EEaaaavbxx
1fdj_A_11601fdj   A11771184CQQNGLVPHHHTT-EEaaaavbxx
1fs0_G_911fs0   G106113WTDKGVQCHHHTT-EEaaaavxxb
1g2o_A_2101g2o   A216223ARAAGAEVHHHTT-EEaaaavbxb
1h05_A_291h05   A4047AAELGLKAHHHTT-EEaaaavbbx
1hwx_A_2541hwx   A263270LHRFGAKCHHHTT-EEaaaavxbx
1iw7_C_8831iw7   C894901GYFLGQRYHHHHTEEEaaaalbbb
1k44_A_191k44   A2633IERKGLTIHHHTT-EEaaaagxbx
1k8t_A_3091k8t   A319326ARELNTYIHHHHTEEEaaaalbxb
1l9x_A_341l9x   A4047LESAGARVHHHTT-EEaaaavbbb
1m0s_A_1411m0s   A148155LAALGGSPHHHTT-EEaaaagxbw
1nns_A_2861nns   A286293DAKYGFVAHHHHTEEEaaaavxbx
1now_A_3801now   A395402IATINKGSHHHTT-EEaaaalbxb
1o8b_A_1401o8b   A147154LVKLGGRPHHHTT-EEaaaagbbw
1o98_A_4111o98   A432439ILAKGGIAHHHTT-EEaaaavxbb
1pq3_A_891pq3   A106113AVSDGYSCHHHTT-EEaaaavxxx
1qe5_A_2251qe5   A231238ARHCGLEVHHHTT-EEaaaavxxb
1qh4_A_3081qh4   A312319LKRLRLQKHHHHTEEEaaaalbbb
1spb_P_231spb   P3037ISEKGGKVHHHTT-EEaaaavxbp
1ufk_A_2241ufk   A231238MAGAGFRPHHHTT-EEaaaavxbw
1xgs_A_301xgs   A4148IMELGGKPHHHTT-EEaaaagbbx
1xyz_A_7301xyz   A743750YAEIGVIVHHHTT-EEaaaavbxb
2cev_A_682cev   A8592VVQRGRFPHHHTT-EEaaaavbxw
2sfa_*_1792sfa   -183190LSAYGVSIHHHHTEEEaaaavbbx
2sga_*_2312sga   -235242LSAYGATVHHHHTEEEaaaavbbx
3pfk_*_1393pfk   -157164ATSHERTYHHHTT-EEaaaalbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ado_A_1601ado   A     13P1,3-DIHYDROXYACETONEPHOSPHATE E - 187
1ado_A_1601ado   A     13P1,3-DIHYDROXYACETONEPHOSPHATE E - 189
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN V - 18
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN G - 19
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN N - 20
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN I - 22
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN L - 23
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN F - 27
1ccw_A_181ccw   A     CNCCO-CYANOCOBALAMIN L - 40
1esw_A_1791esw   A     EDO1,2-ETHANEDIOL F - 184
1esw_A_1791esw   A     EDO1,2-ETHANEDIOL H - 185
1esw_A_1791esw   A     ACRACARBOSE P - 215
1esw_A_1791esw   A     EDO1,2-ETHANEDIOL P - 215
1fa2_A_711fa2   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE I - 90
1fa2_A_711fa2   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE S - 92
1fdj_A_11601fdj   A     2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) E - 1187
1fdj_A_11601fdj   A     2FP1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) E - 1189
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL T - 230
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL N - 231
1g2o_A_2101g2o   A     IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL L - 232
1hwx_A_2541hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 254
1hwx_A_2541hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE V - 255
1hwx_A_2541hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 256
1hwx_A_2541hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE L - 257
1hwx_A_2541hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE H - 258
1hwx_A_2541hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 261
1hwx_A_2541hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE Y - 262
1hwx_A_2541hwx   A     GTPGUANOSINE-5'-TRIPHOSPHATE R - 265
1hwx_A_2541hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 274
1hwx_A_2541hwx   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE E - 275
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 886
1iw7_C_8831iw7   C     MGMAGNESIUM ION H - 889
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 890
1iw7_C_8831iw7   C     MGMAGNESIUM ION Y - 895
1iw7_C_8831iw7   C     MGMAGNESIUM ION F - 896
1iw7_C_8831iw7   C     MGMAGNESIUM ION L - 897
1iw7_C_8831iw7   C     MGMAGNESIUM ION G - 898
1iw7_C_8831iw7   C     MGMAGNESIUM ION Q - 899
1iw7_C_8831iw7   C     MGMAGNESIUM ION R - 900
1iw7_C_8831iw7   C     MGMAGNESIUM ION Y - 901
1now_A_3801now   A     IFG(2R,3R,4S,5R)-2-ACETAMIDO-3,4-DIHYDROXY-5-HYDROXYMETHYL-PIPERIDINIUM W - 405
1o8b_A_1401o8b   A     MSESELENOMETHIONINE R - 140
1o8b_A_1401o8b   A     MSESELENOMETHIONINE S - 141
1o8b_A_1401o8b   A     MSESELENOMETHIONINE A - 142
1o8b_A_1401o8b   A     MSESELENOMETHIONINE L - 147
1o8b_A_1401o8b   A     MSESELENOMETHIONINE L - 150
1o8b_A_1401o8b   A     MSESELENOMETHIONINE G - 151
1o8b_A_1401o8b   A     MSESELENOMETHIONINE G - 152
1o8b_A_1401o8b   A     MSESELENOMETHIONINE R - 153
1pq3_A_891pq3   A     SULSULFATE ANION R - 90
3pfk_*_1393pfk   *     PO4PHOSPHATE ION R - 154
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h05_A_291h05   A SO3SO4 BINDING SITE FOR CHAIN AR - 50

Clusters included in this Subclass
CLUSTER: HE.2.8