ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.3.9

Subclass Accession number: 8170
Subclass: 1.3.9

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 5

Average sequence ID (%) : 11.1 +/- 13.3
Average RMSD (Å) : 0.520 +/- 0.249

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 0-45

rho (°): 90-135

Consensus Sequence:	hphph
(φψ)-conformation:	aapbb

Pattern:	[ekp]	[EHY]	x	[AFMY]	[ags]	[ANQRT]	[AFIKV]	[kv]	[pvw]
Conservation:	-0.067	2.033	-0.396	0.052	-0.130	-0.153	-0.882	0.951	-1.408

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dmt_A_462	1dmt	A	469	477	EEKALAIKE	HHHHHH-EE	aaaaaapxx
1dmt_A_608	1dmt	A	622	630	VYQYGNFSW	HHHHHT-EE	aaaaaaxbb
1eg7_A_1215	1eg7	A	1219	1227	KERFSRKVV	HHHHHT-EE	aaaaaaxxa
1ff9_A_201	1ff9	A	201	209	PELMATAKP	HHHHHT-EE	aaaaaaxxp
1kjq_A_374	1kjq	A	382	390	KHAAGQVKV	HHHHHH-EE	aaaaaaxxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 622
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 623
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 624
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 625
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 626
1dmt_A_608	1dmt	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 627
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	V - 374
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	V - 375
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	D - 376
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	I - 378
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	E - 379
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	R - 380
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	A - 381
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	H - 383
1kjq_A_374	1kjq	A	EDO1,2-ETHANEDIOL	A - 384

Clusters included in this Subclass

CLUSTER: HE.1.68

CLUSTER: HE.2.99