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Information on SUBCLASS 2.2.3
Subclass Accession number: 8202
Subclass: 2.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 14.6 +/- 17.9
Average RMSD (Å) : 0.725 +/- 0.153

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XphpXh
(φψ)-conformation: aapabb
Pattern: [ACILMPVY][adekqrs]x[AFIKLTV][acfilmwy][adegpqs]x[afgltv][deknqrt]x[cfiltvw]xx
Conservation:0.933-0.435-0.9670.305-1.0250.9530.0010.2572.201-1.2060.530-0.539-1.008
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a7t_A_1851a7t   A192204VKAKFPSARYVVPHHHH-TT-SEEEEaaaaaaaxabbbx
1bx4_A_2071bx4   A210222LMKVMPYVDILFGHHHHGGG-SEEEEaaaaaaaxabbbb
1c8k_A_6501c8k   A653665AEKVIPAADLSEQHHHHGGG-SEEEEaaaaaaaxabbxb
1cc1_S_1061cc1   S110122IRDLAPKSLATVAHHHHGGGSSEEEEaaaaaaaxabbbx
1clx_A_1001clx   A112124AAHFAGQVKSWDVHHHTTTT-SEEEEaaaaaaababbxa
1cqz_A_1341cqz   A140152MCELSQHFDFLIEHHHHGGG-SEEEEaaaaaaababbxx
1df7_A_971df7   A100112YALALPYATRCEVHHHHGGG-SEEEEaaaaaaaxabbbb
1dj2_A_341dj2   A3850VDILAQHFDIVARHHHHGGG-SEEEEaaaaaaababbbx
1dj3_A_331dj3   A3749VDVLAPRFDIVARHHHHGGG-SEEEEaaaaaaababbbx
1eu1_A_4421eu1   A445457MLKAWEKLETFIVHHHHGGG-SEEEEaaaaaaaxabbbb
1h8e_D_3201h8e   D322334PATTFAHLDATTVHHHHGGG-SEEEEaaaaaaababbbb
1jje_A_1761jje   A183195LKSKYGKAKLVVPHHHHTTT-SEEEEaaaaaaaxabbbx
1l5r_A_6501l5r   A653665AEKVIPATDLSEQHHHHGGG-SEEEEaaaaaaaxabxxb
1l5w_A_6151l5w   A618630AEKLIPAADISEQHHHHGGG-SEEEEaaaaaaaxabbxb
1li4_A_2621li4   A262274MDEACQEGNIFVTHHHHTTT-SEEEEaaaaaaaxabbbb
1m2x_A_2391m2x   A249261IQQKFSGAQYVVAHHHHTTT-SEEEEaaaaaaapabbbx
1o94_A_2391o94   A244256VEMADSLVDMWDIHHHHGGG-SEEEEaaaaaaababxbb
1p3y_1_251p3y   12840LLYFKSFFKEIRVHHHHTTTSSEEEEaaaaaaababbbb
1php_*_1981php   -205217IDNLLEKVDNLIIHHHHTTT-SEEEEaaaaaaaxabbbb
1qpg_*_2181qpg   -221233IDNLLDKVDSIIIHHHHTTT-SEEEEaaaaaaaxabbbb
1ra9_*_971ra9   -100112YEQFLPKAQKLYLHHHHGGG-SEEEEaaaaaaaxabbbb
1tmo_*_4511tmo   -454466MKQAFHKLECVVTHHHHHTT-SEEEEaaaaaaaxabbbb
1ubk_S_941ubk   S98110CSRILPKAQAVIAHHHHGGGSSEEEEaaaaaaaxabbbx
1ujp_A_291ujp   A3648VEEVLPYADLLEIHHHHGGG-SSEEEaaaaaaaxabbbb
1vdr_A_1031vdr   A106118YALFQPHLDRMVLHHHHGGG-SEEEEaaaaaaaxabbbb
1ygp_A_6501ygp   A653665AEIIIPASDLSEHHHHHGGG-SEEEEaaaaaaaxabbxb
2dld_A_1932dld   A193205LDDLYKQADVISLHHHHTTT-SEEEEaaaaaaNxabbbx
2frv_A_922frv   A96108CAEVAPKAKAVIAHHHHGGGSSEEEEaaaaaaaxabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED F - 221
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED G - 222
1bx4_A_2071bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED N - 223
1bx4_A_2071bx4   A     ADNADENOSINE N - 223
1c8k_A_6501c8k   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 650
1c8k_A_6501c8k   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 653
1c8k_A_6501c8k   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 657
1c8k_A_6501c8k   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 665
1cc1_S_1061cc1   S     FS4IRON/SULFUR CLUSTER V - 123
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 97
1df7_A_971df7   A     GOLGLYCEROL G - 97
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 98
1df7_A_971df7   A     GOLGLYCEROL Q - 98
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 99
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 100
1df7_A_971df7   A     MTXMETHOTREXATE Y - 100
1df7_A_971df7   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 102
1df7_A_971df7   A     MTXMETHOTREXATE E - 111
1df7_A_971df7   A     MTXMETHOTREXATE V - 112
1df7_A_971df7   A     GOLGLYCEROL V - 112
1df7_A_971df7   A     MTXMETHOTREXATE T - 113
1df7_A_971df7   A     GOLGLYCEROL T - 113
1df7_A_971df7   A     GOLGLYCEROL E - 114
1df7_A_971df7   A     GOLGLYCEROL V - 115
1dj2_A_341dj2   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 34
1dj2_A_341dj2   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 35
1dj2_A_341dj2   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 36
1dj3_A_331dj3   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 33
1dj3_A_331dj3   A     GDPGUANOSINE-5'-DIPHOSPHATE G - 34
1dj3_A_331dj3   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 35
1eu1_A_4421eu1   A     GLCGLUCOSE R - 444
1eu1_A_4421eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 458
1eu1_A_4421eu1   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 459
1l5w_A_6151l5w   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 615
1l5w_A_6151l5w   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 616
1l5w_A_6151l5w   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 618
1l5w_A_6151l5w   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 622
1l5w_A_6151l5w   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 630
1m2x_A_2391m2x   A     GOLGLYCEROL V - 239
1o94_A_2391o94   A     FMNFLAVIN MONONUCLEOTIDE T - 257
1php_*_1981php   *     ADPADENOSINE-5'-DIPHOSPHATE D - 200
1php_*_1981php   *     ADPADENOSINE-5'-DIPHOSPHATE K - 201
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 97
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 98
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 99
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 100
1ra9_*_971ra9   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 102
1tmo_*_4511tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER V - 467
1tmo_*_4511tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER D - 468
1ubk_S_941ubk   S     MPD2-METHYL-2,4-PENTANEDIOL Q - 106
1ubk_S_941ubk   S     FS4IRON/SULFUR CLUSTER Y - 111
1ujp_A_291ujp   A     CITCITRIC ACID E - 47
1vdr_A_1031vdr   A     PO4PHOSPHATE ION A - 103
1vdr_A_1031vdr   A     PO4PHOSPHATE ION A - 104
1vdr_A_1031vdr   A     PO4PHOSPHATE ION I - 105
2dld_A_1932dld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 205
2frv_A_922frv   A     FS4IRON/SULFUR CLUSTER I - 109

Clusters included in this Subclass
CLUSTER: HE.4.53
CLUSTER: HE.5.110
CLUSTER: HE.5.27
CLUSTER: HE.5.98
CLUSTER: HE.6.17
CLUSTER: HE.6.27