Information on SUBCLASS 2.2.5 |
Subclass Accession number: 8204
Subclass: 2.2.5 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 25 Average sequence ID (%) : 15.1 +/- 17.0 Average RMSD (Å) : 0.748 +/- 0.156 Consensus geometry
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Consensus Sequence: | XXhpXh |
(φψ)-conformation: | aapabb |
Pattern: | x | [adegkqrt] | x | [afkltv] | [adeknqs] | x | [afgilvy] | [cdehq] | x | [afilvwy] | x |
Conservation: | -1.404 | -0.231 | -0.508 | -0.201 | 0.385 | -0.727 | -0.401 | 2.205 | -0.740 | 0.573 | 1.049 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
13pk_A_145 | 13pk | A | 153 | 163 | KILASYGDVYI | HHHHTT-SEEE | aaaaaababbb |
1ax4_A_246 | 1ax4 | A | 251 | 261 | FDMYKYADALT | HHHGGG-SEEE | aaaaaababbb |
1bg6_*_69 | 1bg6 | - | 70 | 80 | GLAVKDADVIL | HHHHTT-SEEE | aaaaaaxabbb |
1bkc_A_326 | 1bkc | A | 326 | 336 | AEEASKVCLAH | HHHHTTSSEEE | aaaaaababbb |
1c4k_A_70 | 1c4k | A | 70 | 80 | ADELKKIFHII | HHHHTT--EEE | aaaaaaxabbb |
1ff9_A_59 | 1ff9 | A | 63 | 73 | DAEVAKHDLVI | HHHHTTSSEEE | aaaaaababbb |
1g8p_A_203 | 1g8p | A | 203 | 213 | PQLLDRFGLSV | HHHHTT-SEEE | aaaaaaxabbb |
1gpw_B_85 | 1gpw | B | 85 | 94 | LGMQLLFEES. | HHHHTTSSEE. | aaaaaaxabb. |
1j6u_A_359 | 1j6u | A | 361 | 371 | AKALQLADEVV | HHHHTTSSEEE | aaaaaaxabbb |
1jl3_A_69 | 1jl3 | A | 69 | 79 | SDILNNADLVV | HHHHTT-SEEE | aaaaaaxabbb |
1k1e_A_129 | 1k1e | A | 129 | 138 | IYVKNAVDHV. | HHHHTTSSEE. | aaaaaaxabx. |
1ka9_H_83 | 1ka9 | H | 83 | 92 | VGMQVLYEGS. | HHHHTTSSEE. | aaaaaaxabb. |
1kep_A_66 | 1kep | A | 70 | 80 | DKLAAKADAIV | HHHHTT-SEEE | aaaaaababbb |
1l7d_A_61 | 1l7d | A | 62 | 72 | AQALSQADVVW | HHHHSS-SEEE | aaaaaaxabbb |
1ll7_A_224 | 1ll7 | A | 225 | 235 | AEMDKYLDFWN | HHHHTT-SEEE | aaaaaababbx |
1ltk_A_143 | 1ltk | A | 151 | 161 | NDLTKLADVFI | HHHHTS-SEEE | aaaaaababbb |
1moq_*_453 | 1moq | - | 458 | 468 | AEDFSDKHHAL | HHHHTT-SEEE | aaaaaaxabbb |
1nui_A_193 | 1nui | A | 193 | 203 | YEYFDQFEQII | HHHHTTBS-EE | aaaaaababbx |
1nwc_A_61 | 1nwc | A | 61 | 71 | IEELKKLDIIV | HHHHTT-SEEE | aaaaaaxabbb |
1pbt_A_172 | 1pbt | A | 172 | 182 | FRALNTSLYVL | HHHHTT-SEEE | aaaaaaxabbb |
1php_*_128 | 1php | - | 132 | 142 | KAFAELADLYV | HHHHTT-SEEE | aaaaaababbb |
1qpg_*_141 | 1qpg | - | 149 | 159 | HELSSLADVYI | HHHHHT-SEEE | aaaaaababbb |
1ual_A_96 | 1ual | A | 99 | 109 | VTELAQNQKLI | HHHHTT-SEEE | aaaaaaxabbb |
1uqu_A_169 | 1uqu | A | 173 | 183 | LEQLCDYDLLG | HHHHTTSSEEE | aaaaaaxabbb |
1vpe_*_128 | 1vpe | - | 132 | 142 | KFWASLADIHV | HHHHTT-SEEE | aaaaaababbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ax4_A_246 | 1ax4 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | M - 262 |
1ax4_A_246 | 1ax4 | A | LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) | S - 263 |
1kep_A_66 | 1kep | A | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | H - 81 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | K - 143 |
1ltk_A_143 | 1ltk | A | AMPADENOSINE MONOPHOSPHATE | K - 143 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | E - 144 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | E - 147 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | F - 160 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | N - 162 |
1ltk_A_143 | 1ltk | A | MSESELENOMETHIONINE | D - 163 |
1pbt_A_172 | 1pbt | A | FMTFORMIC ACID | A - 174 |
1pbt_A_172 | 1pbt | A | FMTFORMIC ACID | T - 177 |
1pbt_A_172 | 1pbt | A | MSESELENOMETHIONINE | F - 183 |
1pbt_A_172 | 1pbt | A | MSESELENOMETHIONINE | L - 184 |
1pbt_A_172 | 1pbt | A | MSESELENOMETHIONINE | I - 185 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ax4_A_246 | 1ax4 | A | LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE. | S - 263 |
Clusters included in this Subclass |
CLUSTER: HE.3.35 |
CLUSTER: HE.4.32 |
CLUSTER: HE.5.20 |