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Information on SUBCLASS 2.2.5
Subclass Accession number: 8204
Subclass: 2.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 15.1 +/- 17.0
Average RMSD (Å) : 0.748 +/- 0.156

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXhpXh
(φψ)-conformation: aapabb
Pattern: x[adegkqrt]x[afkltv][adeknqs]x[afgilvy][cdehq]x[afilvwy]x
Conservation:-1.404-0.231-0.508-0.2010.385-0.727-0.4012.205-0.7400.5731.049
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
13pk_A_14513pk   A153163KILASYGDVYIHHHHTT-SEEEaaaaaababbb
1ax4_A_2461ax4   A251261FDMYKYADALTHHHGGG-SEEEaaaaaababbb
1bg6_*_691bg6   -7080GLAVKDADVILHHHHTT-SEEEaaaaaaxabbb
1bkc_A_3261bkc   A326336AEEASKVCLAHHHHHTTSSEEEaaaaaababbb
1c4k_A_701c4k   A7080ADELKKIFHIIHHHHTT--EEEaaaaaaxabbb
1ff9_A_591ff9   A6373DAEVAKHDLVIHHHHTTSSEEEaaaaaababbb
1g8p_A_2031g8p   A203213PQLLDRFGLSVHHHHTT-SEEEaaaaaaxabbb
1gpw_B_851gpw   B8594LGMQLLFEES.HHHHTTSSEE.aaaaaaxabb.
1j6u_A_3591j6u   A361371AKALQLADEVVHHHHTTSSEEEaaaaaaxabbb
1jl3_A_691jl3   A6979SDILNNADLVVHHHHTT-SEEEaaaaaaxabbb
1k1e_A_1291k1e   A129138IYVKNAVDHV.HHHHTTSSEE.aaaaaaxabx.
1ka9_H_831ka9   H8392VGMQVLYEGS.HHHHTTSSEE.aaaaaaxabb.
1kep_A_661kep   A7080DKLAAKADAIVHHHHTT-SEEEaaaaaababbb
1l7d_A_611l7d   A6272AQALSQADVVWHHHHSS-SEEEaaaaaaxabbb
1ll7_A_2241ll7   A225235AEMDKYLDFWNHHHHTT-SEEEaaaaaababbx
1ltk_A_1431ltk   A151161NDLTKLADVFIHHHHTS-SEEEaaaaaababbb
1moq_*_4531moq   -458468AEDFSDKHHALHHHHTT-SEEEaaaaaaxabbb
1nui_A_1931nui   A193203YEYFDQFEQIIHHHHTTBS-EEaaaaaababbx
1nwc_A_611nwc   A6171IEELKKLDIIVHHHHTT-SEEEaaaaaaxabbb
1pbt_A_1721pbt   A172182FRALNTSLYVLHHHHTT-SEEEaaaaaaxabbb
1php_*_1281php   -132142KAFAELADLYVHHHHTT-SEEEaaaaaababbb
1qpg_*_1411qpg   -149159HELSSLADVYIHHHHHT-SEEEaaaaaababbb
1ual_A_961ual   A99109VTELAQNQKLIHHHHTT-SEEEaaaaaaxabbb
1uqu_A_1691uqu   A173183LEQLCDYDLLGHHHHTTSSEEEaaaaaaxabbb
1vpe_*_1281vpe   -132142KFWASLADIHVHHHHTT-SEEEaaaaaababbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 262
1ax4_A_2461ax4   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 263
1kep_A_661kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 81
1ltk_A_1431ltk   A     MSESELENOMETHIONINE K - 143
1ltk_A_1431ltk   A     AMPADENOSINE MONOPHOSPHATE K - 143
1ltk_A_1431ltk   A     MSESELENOMETHIONINE E - 144
1ltk_A_1431ltk   A     MSESELENOMETHIONINE E - 147
1ltk_A_1431ltk   A     MSESELENOMETHIONINE F - 160
1ltk_A_1431ltk   A     MSESELENOMETHIONINE N - 162
1ltk_A_1431ltk   A     MSESELENOMETHIONINE D - 163
1pbt_A_1721pbt   A     FMTFORMIC ACID A - 174
1pbt_A_1721pbt   A     FMTFORMIC ACID T - 177
1pbt_A_1721pbt   A     MSESELENOMETHIONINE F - 183
1pbt_A_1721pbt   A     MSESELENOMETHIONINE L - 184
1pbt_A_1721pbt   A     MSESELENOMETHIONINE I - 185
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ax4_A_2461ax4   A LPAPYRIDOXAL 5-PHOSPHATE BINDING SITE.S - 263

Clusters included in this Subclass
CLUSTER: HE.3.35
CLUSTER: HE.4.32
CLUSTER: HE.5.20