Information on SUBCLASS 2.2.11 |
Subclass Accession number: 8210
Subclass: 2.2.11 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 9 Average sequence ID (%) : 11.9 +/- 20.0 Average RMSD (Å) : 0.833 +/- 0.173 Consensus geometry
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Consensus Sequence: | XXXXXX |
(φψ)-conformation: | aapabb |
Pattern: | [apvw] | x | x | x | [agkrst] | x | [dep] | x | [afkv] | x | x |
Conservation: | -0.475 | -1.349 | -0.937 | 1.299 | -0.418 | -0.120 | 1.997 | 0.118 | -0.365 | 0.251 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1c9k_A_104 | 1c9k | A | 120 | 130 | AACQRCPAKVV | HHHHH--SEEE | aaaaaxaxxbb |
1gvh_A_305 | 1gvh | A | 310 | 320 | ELGQSLPRFTA | HHHHTSSSEEE | aaaaaxabbbb |
1idk_*_28 | 1idk | - | 32 | 42 | VSYLGDDEARV | HHHHHSSS-EE | aaaaaxabpbb |
1jg7_A_268 | 1jg7 | A | 271 | 281 | WETMASDAVML | HHHHTSSSEEE | aaaaaxabxxb |
1l5w_A_390 | 1l5w | A | 392 | 400 | VWAKLAVVH.. | HHHHH-SEE.. | aaaaaxabb.. |
1o7d_C_502 | 1o7d | C | 502 | 512 | PLTQTAERFQV | HHHHH-SEEEE | aaaaaxabbbb |
2bgt_*_268 | 2bgt | - | 271 | 281 | WETMASDAVML | HHHHHSSSEEE | aaaaaxabxxb |
2kfn_A_336 | 2kfn | A | 344 | 354 | AKLEKAPVFAF | HHHHTSSSEEE | aaaaaxabbxb |
5rub_A_336 | 5rub | A | 340 | 349 | AYMLTQDEAQ. | HHHHH-SEEE. | aaaaaxabbb. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1c9k_A_104 | 1c9k | A | PO4PHOSPHATE ION | V - 132 |
1jg7_A_268 | 1jg7 | A | MNMANGANESE (II) ION | L - 268 |
1jg7_A_268 | 1jg7 | A | UDPURIDINE-5'-DIPHOSPHATE | L - 268 |
1jg7_A_268 | 1jg7 | A | UDPURIDINE-5'-DIPHOSPHATE | R - 269 |
1jg7_A_268 | 1jg7 | A | UDPURIDINE-5'-DIPHOSPHATE | E - 272 |
2kfn_A_336 | 2kfn | A | ZNZINC ION | D - 355 |
2kfn_A_336 | 2kfn | A | MNMANGANESE (II) ION | D - 355 |
2kfn_A_336 | 2kfn | A | SSULFUR ATOM | D - 355 |
2kfn_A_336 | 2kfn | A | ZNZINC ION | T - 356 |
2kfn_A_336 | 2kfn | A | MNMANGANESE (II) ION | T - 356 |
2kfn_A_336 | 2kfn | A | SSULFUR ATOM | T - 356 |
2kfn_A_336 | 2kfn | A | ZNZINC ION | E - 357 |
2kfn_A_336 | 2kfn | A | MNMANGANESE (II) ION | E - 357 |
2kfn_A_336 | 2kfn | A | SSULFUR ATOM | E - 357 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
2kfn_A_336 | 2kfn | A | EXOEXONUCLEASE ACTIVE SITE. | D - 355 |
Clusters included in this Subclass |
CLUSTER: HE.3.72 |