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Information on SUBCLASS 2.3.3
Subclass Accession number: 8227
Subclass: 2.3.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 12.9 +/- 15.9
Average RMSD (Å) : 0.608 +/- 0.206

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXcXhX
(φψ)-conformation: aalabb
Pattern: [adegknrst][afgilm]xx[adegkqrst][dgknqr]x[acgilvy]xxx
Conservation:-0.3530.810-0.687-0.795-0.4271.8080.3541.262-0.982-0.990-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ajs_A_931ajs   A93103PALQEKRVGGVHHHHTT-EEEEaaaaalabbbb
1ars_*_931ars   -93103ALINDKRARTAHHHHTT-EEEEaaaaalabbbb
1b3o_A_4761b3o   A481491AMMYSGELKFEHHHHHT-SEEEaaaaagaxbbb
1ddg_A_5781ddg   A587597ELRVERRYQRDHHHHTT-EEEEaaaaavabbbb
1ei9_A_2711ei9   A273283AMDKAGQLVFLHHHHTT-EEEEaaaaavabbbb
1f20_A_13741f20   A13831393RLRDDNRYHEDHHHHTT-EEEEaaaaalabbbb
1fkn_A_2591fkn   A259269DGFWLGEQLVCHHHHTT-S-EEaaaaavabxbb
1i1n_A_1281i1n   A128138TLLSSGRVQLVHHHHTSSEEEEaaaaavabbbb
1ikt_A_891ikt   A91101KAFFSGRLKARHHHHTTSSEEEaaaaavabbbb
1ile_*_1521ile   -164174NLFDRGLLYRDHHHHTT-EEEEaaaaalabbxb
1ja1_A_6561ja1   A665675KLMTKGRYSLNHHHHTTSEEEEaaaaavabbbb
1jn1_A_1391jn1   A139149GFTGRQEGIACHHHHTTSEEEEeaaaavabbbb
1jva_A_5681jva   A572580AIVGLGFLK..HHHHTTSEE..aaaaavabb..
1kcf_A_1911kcf   A197206ELIDGQKILF.HHHHTTSEEE.aaaaalabbb.
1ksk_A_151ksk   A2029REIRGNRVTV.HHHHTT-EEE.aaaaavabbb.
1lml_*_2741lml   -276286FFEDARIVANVHHHHTT-EEEEaaaaavabbbb
1oao_A_601oao   A6068KIGYEGICC..HHHHTT-EE..aaaaavabb..
1p5h_A_3601p5h   A361371SLQKVGTVVEVHHHHTTSEEEEaaaaavabbxx
1pja_A_2641pja   A266276TLLARGAIVRCHHHHTT-EEEEaaaaavaxbxb
1q7e_A_3501q7e   A351361SLRQSGSVVEVHHHHTTSEEEEaaaaavabbxb
1qmv_A_1101qmv   A111119LSEDYGVLK..HHHHTT-EE..aaaaavaxx..
1rlr_*_1891rlr   -198206DAVSTFKIS..HHHHTTSEE..aaaaavabb..
1yaa_A_931yaa   A93103DALQEDRVISVHHHHTT-EEEEaaaaalabxbb
2cst_A_932cst   A93103PAIAQKRVGSVHHHHTT-EEEEaaaaalabbbb
7aat_A_937aat   A93103EAFKSGRYVTVHHHHTT-EEEEaaaaalabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ajs_A_931ajs   A     PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID L - 106
1ars_*_931ars   *     PLPPYRIDOXAL-5'-PHOSPHATE P - 106
1ddg_A_5781ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 597
1ddg_A_5781ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 598
1f20_A_13741f20   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 1393
1f20_A_13741f20   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 1394
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 94
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 L - 98
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 A - 100
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 675
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 676
1ja1_A_6561ja1   A     FMNFLAVIN MONONUCLEOTIDE V - 676
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 677
1ja1_A_6561ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE W - 677
1jn1_A_1391jn1   A     COCOBALT (II) ION E - 150
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER K - 60
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER I - 61
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER G - 62
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER Y - 63
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER C - 67
1oao_A_601oao   A     FE2FE (II) ION C - 67
1oao_A_601oao   A     SF4IRON/SULFUR CLUSTER C - 68
1oao_A_601oao   A     FE2FE (II) ION C - 68
1qmv_A_1101qmv   A     NCBN-CARBAMOYL-ALANINE G - 116
1qmv_A_1101qmv   A     NCBN-CARBAMOYL-ALANINE V - 117
1qmv_A_1101qmv   A     NCBN-CARBAMOYL-ALANINE L - 118
1yaa_A_931yaa   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 106
7aat_A_937aat   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 106
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oao_A_601oao   A BC8SF4 BINDING SITE FOR CHAIN AG - 62
1oao_A_601oao   A BC8SF4 BINDING SITE FOR CHAIN AC - 67
1oao_A_601oao   A AC1SF4 BINDING SITE FOR CHAIN AC - 68

Clusters included in this Subclass
CLUSTER: HE.2.33
CLUSTER: HE.3.70
CLUSTER: HE.4.40
CLUSTER: HE.4.84