ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.3.5

Subclass Accession number: 8229
Subclass: 2.3.5

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 13

Average sequence ID (%) : 11.8 +/- 14.3
Average RMSD (Å) : 0.577 +/- 0.164

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 135-180

Consensus Sequence:	pXcphX
(φψ)-conformation:	aalabb

Pattern:	[adegpq]	x	[aflmv]	[ehkqrswy]	x	[EGKN]	[ekrty]	[afilvy]	x	[fglmvy]	[acgikv]
Conservation:	0.462	-0.917	0.043	-0.474	-0.495	2.436	0.552	0.608	-0.968	-0.347	-0.900

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b3o_A_476	1b3o	A	481	491	AMMYSGELKFE	HHHHHT-SEEE	aaaaagaxbbb
1bu6_O_151	1bu6	O	153	163	ERARRGELLFG	HHHHHT--EEE	aaaaagabbbb
1d4d_A_430	1d4d	A	433	443	GYVHLNIVKEG	HHHHTT--EEE	aaaaavabxbb
1ekj_A_289	1ekj	A	293	303	EGLVNKTLALK	HHHHTTS-EEE	aaaaalabbbb
1fkn_A_259	1fkn	A	259	269	DGFWLGEQLVC	HHHHTT-S-EE	aaaaavabxbb
1gmx_A_9	1gmx	A	14	24	QKLQEKEAVLV	HHHHTT--EEE	aaaaavabbbb
1ivh_A_114	1ivh	A	122	132	PKLISGEYIGA	HHHHHTSS-EE	aaaaavabbbb
1kpi_A_262	1kpi	A	286	296	DLFRDKYTDVC	HHHHTTSSEEE	aaaaavabbbb
1poi_A_85	1poi	A	89	99	KWFEAGKLTME	HHHHHT-SEEE	aaaaavabxbb
1qo8_A_425	1qo8	A	429	439	GYDHLEMLYKG	HHHHTT--EEE	aaaaalaxxbb
1qop_B_311	1qop	B	315	325	YLNSIGRADYV	HHHHTTSSEEE	aaaaavabbbb
1rhs_*_164	1rhs	-	169	179	ENLESKRFQLV	HHHHH--SEEE	aaaaavabxbb
1tmo_*_205	1tmo	-	214	224	EKVKQGKIRVI	HHHHHTSSEEE	aaaaavabbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 430
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 432
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	G - 433
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 434
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 436
1d4d_A_430	1d4d	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 437
1gmx_A_9	1gmx	A	ACTACETATE ION	V - 9
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	V - 9
1gmx_A_9	1gmx	A	ACTACETATE ION	A - 10
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	A - 10
1gmx_A_9	1gmx	A	ACTACETATE ION	D - 11
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	H - 13
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	Q - 14
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	K - 15
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	Q - 17
1gmx_A_9	1gmx	A	EDO1,2-ETHANEDIOL	E - 18
1gmx_A_9	1gmx	A	CSSS-MERCAPTOCYSTEINE	V - 24
1gmx_A_9	1gmx	A	CSSS-MERCAPTOCYSTEINE	D - 25
1ivh_A_114	1ivh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 132
1ivh_A_114	1ivh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	L - 133
1ivh_A_114	1ivh	A	COSCOENZYME A PERSULFIDE	L - 133
1ivh_A_114	1ivh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 134
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	Y - 280
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	L - 281
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	C - 284
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	L - 287
1kpi_A_262	1kpi	A	CO3CARBONATE ION	F - 288
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	F - 288
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	Y - 292
1kpi_A_262	1kpi	A	10ADIDECYL-DIMETHYL-AMMONIUM	T - 293
1kpi_A_262	1kpi	A	CO3CARBONATE ION	V - 295
1qo8_A_425	1qo8	A	HEMPROTOPORPHYRIN IX CONTAINING FE	Y - 430
1qo8_A_425	1qo8	A	HEMPROTOPORPHYRIN IX CONTAINING FE	L - 433
1rhs_*_164	1rhs	*	CSSS-MERCAPTOCYSTEINE	V - 179
1rhs_*_164	1rhs	*	CSSS-MERCAPTOCYSTEINE	D - 180
1tmo_*_205	1tmo	*	2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER	I - 226

Clusters included in this Subclass