Logo
Information on SUBCLASS 2.5.3
Subclass Accession number: 8250
Subclass: 2.5.3 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 15.1 +/- 20.0
Average RMSD (Å) : 0.638 +/- 0.253

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXXXX
(φψ)-conformation: aappbb
Pattern: x[eknty]x[AILMVY][aeknqs]x[acgkl][AGNPSTV]xxx
Conservation:-0.068-0.277-0.7492.0680.188-1.366-0.4531.499-0.5900.292-0.545
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ayx_*_1901ayx   -197206VIGYWDSTGF.HHHHTTS-EE.aaaaaabxbx.
1b16_A_2021b16   A203213AELLLSHPTQTHHHHTTS--EEaaaaaabxbbx
1g8p_A_601g8p   A6373RALAALLPEIEHHHHHHS--EEaaaaaaxpxxx
1i7d_A_3971i7d   A409419QYLMQFCPDAVHHHHTTS--EEaaaaaabxpxb
1j2p_A_221j2p   A2838REAVKRGATAIHHHHHTS--EEaaaaaaxpxbb
1j5s_A_121j5s   A1828FNEVKDLPIVDHHHHTTS-EEEaaaaaaxxxbb
1mg5_A_2031mg5   A204214AEKLLAHPTQPHHHHHTS--EEaaaaaaxpbbx
1n8f_A_1941n8f   A199209AINAAGAPHCFHHHHHTS--EEaaaaaaxxbbb
1nsq_A_621nsq   A6676VNYMNSGPVVPHHHHTSS-BEEaaaaaabxbbw
1qho_A_1801qho   A180190RYEAQWKNFTDHHHHHHSB-EEaaaaaabxxbb
1ryp_B_191ryp   B2535LTAVKQGVTSLHHHHHTS--EEaaaaaaxpxbb
1ryp_C_201ryp   C2636LESISHAGTAIHHHHTTS--EEaaaaaaxpxbb
1ryp_D_181ryp   D2434LEAVKRGTCAVHHHHTTS--EEaaaaaaxpxbb
1ryp_E_221ryp   E2838LEAIKLGSTAIHHHHTTS--EEaaaaaaxpxbb
1ryp_F_201ryp   F2636LEAIKQGSVTVHHHHHTS--EEaaaaaaxxxbb
1ryp_G_211ryp   G2737VKAVENGTTSIHHHHHTS--EEaaaaaaxpxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b16_A_2021b16   A     NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT L - 206
1mg5_A_2031mg5   A     ACTACETATE ION L - 207
1nsq_A_621nsq   A     PHSPHOSPHONO GROUP M - 69
1qho_A_1801qho   A     CACALCIUM ION A - 183
1qho_A_1801qho   A     CACALCIUM ION Q - 184
1qho_A_1801qho   A     CACALCIUM ION W - 185
1qho_A_1801qho   A     CACALCIUM ION K - 186
1qho_A_1801qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE F - 188
1qho_A_1801qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE T - 189
1qho_A_1801qho   A     ABDACARBOSE DERIVED HEXASACCHARIDE D - 190

Clusters included in this Subclass
CLUSTER: HE.3.65
CLUSTER: HE.4.51
CLUSTER: HE.5.177
CLUSTER: HE.5.34