Information on SUBCLASS 2.5.3 |
Subclass Accession number: 8250
Subclass: 2.5.3 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 16 Average sequence ID (%) : 15.1 +/- 20.0 Average RMSD (Å) : 0.638 +/- 0.253 Consensus geometry
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Consensus Sequence: | XXXXXX |
(φψ)-conformation: | aappbb |
Pattern: | x | [eknty] | x | [AILMVY] | [aeknqs] | x | [acgkl] | [AGNPSTV] | x | x | x |
Conservation: | -0.068 | -0.277 | -0.749 | 2.068 | 0.188 | -1.366 | -0.453 | 1.499 | -0.590 | 0.292 | -0.545 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ayx_*_190 | 1ayx | - | 197 | 206 | VIGYWDSTGF. | HHHHTTS-EE. | aaaaaabxbx. |
1b16_A_202 | 1b16 | A | 203 | 213 | AELLLSHPTQT | HHHHTTS--EE | aaaaaabxbbx |
1g8p_A_60 | 1g8p | A | 63 | 73 | RALAALLPEIE | HHHHHHS--EE | aaaaaaxpxxx |
1i7d_A_397 | 1i7d | A | 409 | 419 | QYLMQFCPDAV | HHHHTTS--EE | aaaaaabxpxb |
1j2p_A_22 | 1j2p | A | 28 | 38 | REAVKRGATAI | HHHHHTS--EE | aaaaaaxpxbb |
1j5s_A_12 | 1j5s | A | 18 | 28 | FNEVKDLPIVD | HHHHTTS-EEE | aaaaaaxxxbb |
1mg5_A_203 | 1mg5 | A | 204 | 214 | AEKLLAHPTQP | HHHHHTS--EE | aaaaaaxpbbx |
1n8f_A_194 | 1n8f | A | 199 | 209 | AINAAGAPHCF | HHHHHTS--EE | aaaaaaxxbbb |
1nsq_A_62 | 1nsq | A | 66 | 76 | VNYMNSGPVVP | HHHHTSS-BEE | aaaaaabxbbw |
1qho_A_180 | 1qho | A | 180 | 190 | RYEAQWKNFTD | HHHHHHSB-EE | aaaaaabxxbb |
1ryp_B_19 | 1ryp | B | 25 | 35 | LTAVKQGVTSL | HHHHHTS--EE | aaaaaaxpxbb |
1ryp_C_20 | 1ryp | C | 26 | 36 | LESISHAGTAI | HHHHTTS--EE | aaaaaaxpxbb |
1ryp_D_18 | 1ryp | D | 24 | 34 | LEAVKRGTCAV | HHHHTTS--EE | aaaaaaxpxbb |
1ryp_E_22 | 1ryp | E | 28 | 38 | LEAIKLGSTAI | HHHHTTS--EE | aaaaaaxpxbb |
1ryp_F_20 | 1ryp | F | 26 | 36 | LEAIKQGSVTV | HHHHHTS--EE | aaaaaaxxxbb |
1ryp_G_21 | 1ryp | G | 27 | 37 | VKAVENGTTSI | HHHHHTS--EE | aaaaaaxpxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b16_A_202 | 1b16 | A | NAQNICOTINAMIDE ADENINE DINUCLEOTIDE 3-PENTANONE ADDUCT | L - 206 |
1mg5_A_203 | 1mg5 | A | ACTACETATE ION | L - 207 |
1nsq_A_62 | 1nsq | A | PHSPHOSPHONO GROUP | M - 69 |
1qho_A_180 | 1qho | A | CACALCIUM ION | A - 183 |
1qho_A_180 | 1qho | A | CACALCIUM ION | Q - 184 |
1qho_A_180 | 1qho | A | CACALCIUM ION | W - 185 |
1qho_A_180 | 1qho | A | CACALCIUM ION | K - 186 |
1qho_A_180 | 1qho | A | ABDACARBOSE DERIVED HEXASACCHARIDE | F - 188 |
1qho_A_180 | 1qho | A | ABDACARBOSE DERIVED HEXASACCHARIDE | T - 189 |
1qho_A_180 | 1qho | A | ABDACARBOSE DERIVED HEXASACCHARIDE | D - 190 |
Clusters included in this Subclass |
CLUSTER: HE.3.65 |
CLUSTER: HE.4.51 |
CLUSTER: HE.5.177 |
CLUSTER: HE.5.34 |