Information on SUBCLASS 2.5.4 |
Subclass Accession number: 8251
Subclass: 2.5.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 10 Average sequence ID (%) : 11.3 +/- 16.7 Average RMSD (Å) : 0.670 +/- 0.082 Consensus geometry
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Consensus Sequence: | pXXXXX |
(φψ)-conformation: | aappbb |
Pattern: | x | x | x | [ail] | x | x | x | [adpv] | x | x |
Conservation: | 0.664 | -1.322 | -1.005 | 1.486 | 1.135 | 0.779 | 0.130 | -0.095 | -0.660 | -1.112 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bdf_A_78 | 1bdf | A | 82 | 91 | LLNLKGLAVR | HHHHHT--EE | aaaaaaxxbb |
1cke_A_57 | 1cke | A | 61 | 70 | VPLASHLDVR | HHHHHT--EE | aaaaaapxbb |
1h8t_C_2043 | 1h8t | C | 2043 | 2052 | LMEIAEVDSV | HHHHHTS-EE | aaaaaaxxbx |
1iw7_A_75 | 1iw7 | A | 79 | 88 | ILNLKELVVR | HHHHHT--EE | aaaaaaxbbb |
1kkh_A_182 | 1kkh | A | 185 | 194 | EEFLKNCKFL | HHHHHT--EE | aaaaaaxbbb |
1lop_A_130 | 1lop | A | 133 | 142 | VDKIKGVATG | HHHHHTS-EE | aaaaaaxxbb |
1msw_D_314 | 1msw | D | 320 | 329 | INIAQNTAWK | HHHHHT--EE | aaaaaaxxbb |
1nb8_A_360 | 1nb8 | A | 363 | 372 | SFVDYVAVEQ | HHHHHT--EE | aaaaaapxbb |
1or8_A_208 | 1or8 | A | 210 | 219 | KDVAIKEPLV | HHHHHTS-EE | aaaaaabpbb |
3adk_*_2 | 3adk | - | 2 | 11 | EEKLKKSKII | HHHHHTS-EE | aaaaaaxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | K - 83 |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | E - 84 |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | L - 85 |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | V - 86 |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | V - 87 |
1iw7_A_75 | 1iw7 | A | MGMAGNESIUM ION | F - 89 |
1nb8_A_360 | 1nb8 | A | MSESELENOMETHIONINE | Y - 367 |
1or8_A_208 | 1or8 | A | UNKUNKNOWN | L - 218 |
1or8_A_208 | 1or8 | A | UNKUNKNOWN | D - 220 |
Clusters included in this Subclass |
CLUSTER: HE.2.111 |
CLUSTER: HE.2.59 |
CLUSTER: HE.3.103 |
CLUSTER: HE.4.113 |