ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 2.6.1

Subclass Accession number: 8261
Subclass: 2.6.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 31

Average sequence ID (%) : 16.3 +/- 16.3
Average RMSD (Å) : 0.665 +/- 0.224

Consensus geometry

d (Å): 7

delta (°): 135-180

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XXGhph
(φψ)-conformation:	aagpbb

Pattern:	x	[adegknqrs]	x	[cfiltvy]	[adegknqrs]	[adegknqrs]	[afiklmv]	[AEG]	[ACFGLMVWY]	x	[acfilptv]	x	[adegnqrst]	x
Conservation:	-0.659	0.074	-0.470	0.301	-0.219	-0.044	-0.358	3.360	-0.116	-0.341	-0.207	-0.321	-0.541	-0.461

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bgv_A_240	1bgv	A	246	259	AKKLAELGAKAVTL	HHHHHHHT-EEEEE	aaaaaaagbbxabb
1boo_A_111	1boo	A	117	130	IRMIDEVGFFLAED	HHHHHTT--EEEEE	aaaaaaavxbxabx
1cjx_A_27	1cjx	A	27	40	EPIFEIMGFTKVAT	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1cli_A_116	1cli	A	127	140	AEGCLQSGCSLVGG	HHHHHHHT-EEEEE	aaaaaaavbbxaee
1ehw_A_21	1ehw	A	25	38	IQRFERRGFTLVGM	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1f9z_A_82	1f9z	A	86	99	CEKIRQNGGNVTRE	HHHHHHTT-EEEEE	aaaaaaagpbbabp
1g2q_A_136	1g2q	A	142	155	GELVEQLEANLLEY	HHHHHHTT-EEEEE	aaaaaaavbbxabb
1g60_A_76	1g60	A	83	96	CQYLVSKGMIFQNW	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1ghe_A_136	1ghe	A	138	151	EAFYSALAYTRVGE	HHHHHHTT-EEEEE	aaaaaaavxxxaeb
1hwx_A_254	1hwx	A	260	273	MRYLHRFGAKCVAV	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1iho_A_222	1iho	A	230	243	GQELNEKGFRADDI	HHHHHHHT-EEEEE	aaaaaaagxbpabb
1iv3_A_73	1iv3	A	81	94	MRLVEARGAKLLQA	HHHHHHTT--EEEE	aaaaaaavxbpabb
1jn1_A_74	1jn1	A	82	95	FRQVQEKGYKIGNV	HHHHHTTT-EEEEE	aaaaaaavbbxabb
1js3_A_219	1js3	A	226	239	LERDKAAGLIPFFV	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1k44_A_19	1k44	A	23	36	ISRIERKGLTIAAL	HHHHHHTT-EEEEE	aaaaaaagxbxabb
1kpi_A_223	1kpi	A	227	240	DYYSSNAGWKVERY	HHHHHHHT-EEEEE	aaaaaaagxbxabb
1kw3_B_153	1kw3	B	158	171	AFYTEVLGFVLSDI	HHHHHTT--EEEEE	aaaaaaavxbxabb
1lgt_A_154	1lgt	A	159	172	AFYTDVLGFQLSDV	HHHHHTT--EEEEE	aaaaaaavxbxabb
1lh0_A_1132	1lh0	A	1137	1150	MEIIQAHGATLAGV	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1m1n_A_364	1m1n	A	364	377	IGAYEDLGMEVVGT	HHHHHTTT-EEEEE	aaaaaaavxbxabb
1m1n_B_373	1m1n	B	380	393	VKFLLELGCEPVHI	HHHHHHTT-EEEEE	aaaaaaavxbwabb
1m2x_A_125	1m2x	A	125	138	LEYFGKIGAKTYST	HHHHHHTT-EEEEE	aaaaaaavxbObbx
1mhm_B_42	1mhm	B	46	59	DEILGPAECTIVDN	HHHHHHHT-EEEEE	aaaaaaavbbxabb
1mio_A_221	1mio	A	226	239	DRVLEKIGYHVNAT	HHHHHHHT-EEEEE	aaaaaaaNxbxabb
1mio_A_347	1mio	A	352	365	MNMLKSFGVDSLVA	HHHHHHHT-EEEEE	aaaaaaagxxxabb
1nhk_L_20	1nhk	L	24	37	ISRFEEKGLKPVAI	HHHHHHTT-EEEEE	aaaaaaavxxwabb
1npk_*_25	1npk	-	29	42	IARYEKKGFVLVGL	HHHHHHHT-EEEEE	aaaaaaagxxxabb
1o98_A_411	1o98	A	429	442	VDAILAKGGIAIIT	HHHHHHTT-EEEEE	aaaaaaavxbbbxb
1qgu_A_362	1qgu	A	362	375	IGAYEDLGMEIIAA	HHHHHHTT-EEEEE	aaaaaaavxbxabb
1ufk_A_224	1ufk	A	228	241	REAMAGAGFRPLEE	HHHHHHTT-EEEEE	aaaaaaavxbwabb
1xyz_A_730	1xyz	A	740	753	IKRYAEIGVIVSFT	HHHHHHTT-EEEEE	aaaaaaavbxbbxa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	V - 136
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	A - 137
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	A - 139
1ghe_A_136	1ghe	A	MSESELENOMETHIONINE	F - 140
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	F - 140
1ghe_A_136	1ghe	A	MSESELENOMETHIONINE	Y - 141
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	Y - 141
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	A - 143
1ghe_A_136	1ghe	A	MSESELENOMETHIONINE	L - 144
1ghe_A_136	1ghe	A	ACOACETYL COENZYME *A	L - 144
1ghe_A_136	1ghe	A	MSESELENOMETHIONINE	Y - 146
1ghe_A_136	1ghe	A	MSESELENOMETHIONINE	A - 157
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	N - 254
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 255
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 256
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	L - 257
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	H - 258
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	R - 261
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	Y - 262
1hwx_A_254	1hwx	A	GTPGUANOSINE-5'-TRIPHOSPHATE	R - 265
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	G - 274
1hwx_A_254	1hwx	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	E - 275
1js3_A_219	1js3	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 242
1lgt_A_154	1lgt	A	FE2FE (II) ION	Q - 168
1lgt_A_154	1lgt	A	FE2FE (II) ION	L - 169
1lgt_A_154	1lgt	A	BP32'-CHLORO-BIPHENYL-2,3-DIOL	I - 173
1lgt_A_154	1lgt	A	BP32'-CHLORO-BIPHENYL-2,3-DIOL	M - 175
1lh0_A_1132	1lh0	A	OROOROTIC ACID	L - 1154
1mio_A_347	1mio	A	CACALCIUM ION	R - 347
1mio_A_347	1mio	A	HCA3-HYDROXY-3-CARBOXY-ADIPIC ACID	R - 347
1mio_A_347	1mio	A	CFMFE-MO-S CLUSTER	R - 347
1mio_A_347	1mio	A	CFMFE-MO-S CLUSTER	S - 348
1mio_A_347	1mio	A	CFMFE-MO-S CLUSTER	F - 367

Clusters included in this Subclass