ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.1.8

Subclass Accession number: 8304
Subclass: 3.1.8

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 8.3 +/- 10.9
Average RMSD (Å) : 1.000 +/- 0.115

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 270-315

Consensus Sequence:	XXchXhh
(φψ)-conformation:	aagpabb

Pattern:	x	[ASV]	x	[GIVW]	x	x	x	x	x	[AEKL]	x	x	[DGR]	[LPVY]	[DP]	[AGVY]	x	[GIVY]
Conservation:	0.008	0.564	-0.318	-0.808	0.942	-0.400	0.117	-0.644	-0.400	-0.563	0.253	-0.236	0.575	-0.563	3.450	-0.644	-0.688	-0.644

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bvu_A_79	1bvu	A	85	102	LAAWMTWKTAVMDLPYGG	HHHHHHHHHHHHT-S-EE	aaaaaaaaaaaavxabbb
1gmx_A_70	1gmx	A	70	87	SSKGAAQYLLQQGYDVVY	HHHHHHHHHHHHT-SSEE	aaaaaaaaaaaagxabbb
1j93_A_58	1j93	A	61	78	VVEISLQPWKVFRPDGVI	HHHHHHHHHHHH--SEEE	aaaaaaaaaaaalxabbx
1qs0_B_231	1qs0	B	231	248	TVYVAQVAAEESGVDAEV	HHHHHHHHHHHH----EE	aaaaaaaaaaaagpaxxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gmx_A_70	1gmx	A	CSSS-MERCAPTOCYSTEINE	S - 70
1gmx_A_70	1gmx	A	CSSS-MERCAPTOCYSTEINE	S - 71
1gmx_A_70	1gmx	A	CSSS-MERCAPTOCYSTEINE	K - 72
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	K - 72
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	G - 73
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	A - 74
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	A - 75
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Q - 76
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Y - 77
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	L - 78
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	L - 79
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Q - 80
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Q - 81
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Y - 83
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	D - 84
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	V - 85
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	V - 86
1gmx_A_70	1gmx	A	EDO1,2-ETHANEDIOL	Y - 87
1gmx_A_70	1gmx	A	CSSS-MERCAPTOCYSTEINE	I - 89
1qs0_B_231	1qs0	B	MSESELENOMETHIONINE	V - 244
1qs0_B_231	1qs0	B	MSESELENOMETHIONINE	D - 245
1qs0_B_231	1qs0	B	MSESELENOMETHIONINE	D - 250

Clusters included in this Subclass

CLUSTER: HE.3.143