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Information on SUBCLASS 3.2.4
Subclass Accession number: 8308
Subclass: 3.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 13.2 +/- 14.5
Average RMSD (Å) : 0.778 +/- 0.165

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXGhpXX
(φψ)-conformation: aalpabb
Pattern: x[acfgilvy][aeknqrst][adeknqrs]x[GKNRS]x[deknpqrst]xxxx
Conservation:-0.541-0.1780.1000.491-0.6402.766-0.6110.102-0.627-0.101-0.760-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a49_A_4351a49   A439450QVARYRPRAPIIHHHHT--SS-EEaaaaalxaxxxx
1b37_A_141b37   A2233RLSEAGITDLLIHHHHTT---EEEaaaaavxaxbbb
1brm_A_751brm   A8495KLRESGWQGYWIHHHTTT---EEEaaaaavpaxxbb
1dii_A_1341dii   A140149YIQENNLPVM..HHHHTT--EE..aaaaalxabb..
1e0c_A_2351e0c   A242253IAKALGYPRVKGHHHHTT-S-EEEaaaaavxabbbb
1eq2_B_101eq2   B1829ALNDKGITDILVHHHTTT---EEEaaaaavxaxbbx
1f05_A_2121f05   A223234YYKKFSYKTIVMHHHHTT---EEEaaaaalxaxxxb
1gte_A_1971gte   A205216FLARLGYSDITIHHHHTT---EEEaaaaagxabbbb
1h2k_A_1251h2k   A134145DIQQRGGEERLYHHHHTT---EEEaaaaalxapbbb
1h49_A_4281h49   A443454ESIDLGSNVQGYHHHHTT--EEEEaaaaagpaxabb
1hrk_A_3561hrk   A356367LAKECGVENIRRHHHHTT-SEEEEaaaaavxabbbb
1kcz_A_3651kcz   A374384IGMACGARQVL.HHHHHT-SEEE.aaaaavpabbx.
1kqf_A_1711kqf   A180190FARSLGMLAVD.HHHHTTB--EE.aaaaavxaxbb.
1m2k_A_1031m2k   A103114LHERAGSRNVIHHHHHTT--SEEEaaaaagxabbbx
1nsa_*_2541nsa   -257268WAYNQGIKYSFTHHHHTT-S-EEEaaaaagxabbbb
1nwc_A_761nwc   A8596KLKATGWDGYWVHHHHTT--SEEEaaaaavpaxbbb
1nyt_A_2211nyt   A225235WCEQRGSKRNA.HHHHTT--EEE.aaaaagxabbb.
1obb_A_421obb   A5566YVEEVGADLKFEHHHHTT---EEEaaaaavxaxbbb
1onr_A_2011onr   A212223YYKEHGYETVVMHHHHTT---EEEaaaaavxapxxb
1p77_A_2221p77   A226236LCKSLGLTNVS.HHHHTT---EE.aaaaavxaxbb.
1qjw_A_1421qjw   A154165TANKNGGNYAGQHHHHTT--EEEEaaaaavxaxbxb
1qmg_A_1361qmg   A147158SLTEAKSDVVVKHHHHTT---EEEaaaaavxaxxbb
1rhs_*_1081rhs   -114125MFRVFGHRTVSVHHHHTT---EEEaaaaavbaxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b37_A_141b37   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 14
1b37_A_141b37   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 15
1b37_A_141b37   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 16
1b37_A_141b37   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 34
1dii_A_1341dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 134
1e0c_A_2351e0c   A     CSSS-MERCAPTOCYSTEINE R - 235
1e0c_A_2351e0c   A     CSSS-MERCAPTOCYSTEINE S - 236
1e0c_A_2351e0c   A     CSSS-MERCAPTOCYSTEINE G - 237
1eq2_B_101eq2   B     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 10
1eq2_B_101eq2   B     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 11
1eq2_B_101eq2   B     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 12
1eq2_B_101eq2   B     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 30
1eq2_B_101eq2   B     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE D - 31
1gte_A_1971gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 197
1gte_A_1971gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 198
1gte_A_1971gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 199
1gte_A_1971gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE F - 217
1gte_A_1971gte   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 218
1h2k_A_1251h2k   A     OGAN-OXALYOLGLYCINE Y - 145
1h2k_A_1251h2k   A     OGAN-OXALYOLGLYCINE Q - 147
1h49_A_4281h49   A     BGCBETA-D-GLUCOSE W - 457
1kcz_A_3651kcz   A     EDO1,2-ETHANEDIOL R - 366
1kcz_A_3651kcz   A     EDO1,2-ETHANEDIOL E - 369
1kcz_A_3651kcz   A     EDO1,2-ETHANEDIOL N - 373
1kcz_A_3651kcz   A     OCSCYSTEINESULFONIC ACID L - 384
1obb_A_421obb   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 44
1qjw_A_1421qjw   A     CDCADMIUM ION E - 146
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE G - 159
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE G - 160
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE N - 161
1qjw_A_1421qjw   A     MANALPHA-D-MANNOSE Y - 162
1qmg_A_1361qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID Q - 136
1qmg_A_1361qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE Q - 136
1qmg_A_1361qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE A - 137
1qmg_A_1361qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE P - 138
1qmg_A_1361qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE Q - 140
1qmg_A_1361qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE L - 161
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gte_A_1971gte   A AA1FAD BINDING SITE FOR CHAIN AP - 197
1gte_A_1971gte   A AA1FAD BINDING SITE FOR CHAIN AA - 198
1gte_A_1971gte   A AA1FAD BINDING SITE FOR CHAIN AE - 218
1h2k_A_1251h2k   A SO1SO4 BINDING SITE FOR CHAIN AR - 138
1h2k_A_1251h2k   A SO1SO4 BINDING SITE FOR CHAIN AG - 140
1h2k_A_1251h2k   A SO1SO4 BINDING SITE FOR CHAIN AE - 141
1h2k_A_1251h2k   A SO1SO4 BINDING SITE FOR CHAIN AE - 142
1h2k_A_1251h2k   A SO2SO4 BINDING SITE FOR CHAIN AR - 143
1h2k_A_1251h2k   A OGAOGA BINDING SITE FOR CHAIN AY - 145
1h49_A_4281h49   A AC4BGC BINDING SITE FOR CHAIN AW - 457
1obb_A_421obb   A AC1NAD BINDING SITE FOR CHAIN AR - 44

Clusters included in this Subclass
CLUSTER: HE.4.75
CLUSTER: HE.5.23
CLUSTER: HE.6.24
CLUSTER: HE.6.82