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Information on SUBCLASS 3.2.6
Subclass Accession number: 8310
Subclass: 3.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 10.3 +/- 14.3
Average RMSD (Å) : 0.875 +/- 0.212

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXcXpXh
(φψ)-conformation: aalpabb
Pattern: xxxxxxx[dgkns]x[adgknrst]x[acfgilv]xx
Conservation:-1.127-0.6450.287-0.098-0.253-0.737-0.0652.751-0.5330.995-0.6950.434-0.314-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_2641a6q   -272285VDTCLYKGSRDNMSHHHHHHTT--S-EEaaaaaaagxabxbb
1ccw_B_2261ccw   B237250ALLAAEQGVKNITVHHHHHHTT--EEEEaaaaaaagxabbbx
1cdo_A_2301cdo   A230242FEKAKVFGATDFV.HHHHHHTT--EEE.aaaaaaagxabbb.
1ctt_*_1031ctt   -108121ISHAWLSGEKALAAHHHHHHTT---EEEaaaaaaagpabbab
1dbt_A_2001dbt   A200213PAIAREKGSSAIVVHHHHHHTT-SEEEEaaaaaaavxabbbb
1djx_A_3261djx   A329342YIRALCKGCRCLELHHHHHHTT--EEEEaaaaaaavpabbbb
1e3i_A_2331e3i   A233245FPKAKALGATDCL.HHHHHHTT-SEEE.aaaaaaagxabbb.
1ffw_A_151ffw   A2235RNLLKELGFNNVEEHHHHHHTT---EEEaaaaaaavbaxbbb
1fit_*_521fit   -6780TVVEKHFHGTSLTFHHHHHHTT-SEEEEaaaaaaalxabbbb
1h72_C_631h72   C6982KKMIDDFNIGKGVKHHHHHHTT---EEEaaaaaaalxabbbb
1hp1_A_1921hp1   A201214QELQQTEKPDIIIAHHHHHHT--SEEEEaaaaaaalxabbbb
1jtk_A_541jtk   A5972LFKAVSEGDTEFQMHHHHHHTT---EEEaaaaaaavxabbab
1k62_A_2131k62   A214225ELLRAELNFGAI..HHHHHHTT-SEE..aaaaaaalxabb..
1k8w_A_251k8w   A3043QKVKRIYNANRAGHHHHHHHTT-S-EEEaaaaaaalxabbbb
1mio_A_1201mio   A128141HEAYEMFHPAAIGVHHHHHHT--SEEEEbIaaaaalxabbbb
1mio_B_811mio   B89102KNIFSLYNPDIIAVHHHHHHT--SEEEEaaaaaaalxabbbx
1nth_A_2711nth   A283296INAVLMSSASWHLDHHHHHHS--SEEEEaaaaaaalxabbbx
1qtw_A_141qtw   A1830AIRAAEIDATAFA.HHHHHHTT-SEEE.aaaaaaavxabbb.
1r3e_A_251r3e   A3043DEVRKKLKTRKVGHHHHHHHTT-S-EEEaaaaaaalbaxbbb
1r3f_A_251r3f   A3043QKVKRIYNANRAGHHHHHHHTTBSSEEEaaaaaaalxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a6q_*_2641a6q   *     MNMANGANESE (II) ION D - 282
1a6q_*_2641a6q   *     PO4PHOSPHATE ION D - 282
1a6q_*_2641a6q   *     MNMANGANESE (II) ION N - 283
1ctt_*_1031ctt   *     DHZ3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE NUCLEOSIDE A - 103
1ctt_*_1031ctt   *     ZNZINC ION A - 103
1ctt_*_1031ctt   *     DHZ3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE NUCLEOSIDE E - 104
1ctt_*_1031ctt   *     ZNZINC ION E - 104
1ctt_*_1031ctt   *     ZNZINC ION Q - 105
1ctt_*_1031ctt   *     DHZ3,4-DIHYDRO-1H-PYRIMIDIN-2-ONE NUCLEOSIDE V - 124
1dbt_A_2001dbt   A     U5PURIDINE-5'-MONOPHOSPHATE V - 212
1dbt_A_2001dbt   A     U5PURIDINE-5'-MONOPHOSPHATE V - 213
1djx_A_3261djx   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE E - 341
1djx_A_3261djx   A     CACALCIUM ION E - 341
1djx_A_3261djx   A     CACALCIUM ION L - 342
1djx_A_3261djx   A     I3PD-MYO-INOSITOL-1,4,5-TRIPHOSPHATE D - 343
1djx_A_3261djx   A     CACALCIUM ION D - 343
1ffw_A_151ffw   A     PONIMIDO DIPHOSPHATE S - 15
1ffw_A_151ffw   A     PONIMIDO DIPHOSPHATE T - 16
1ffw_A_151ffw   A     PONIMIDO DIPHOSPHATE R - 18
1fit_*_521fit   *     MSESELENOMETHIONINE L - 58
1fit_*_521fit   *     MSESELENOMETHIONINE F - 59
1fit_*_521fit   *     FRUFRUCTOSE K - 71
1fit_*_521fit   *     FRUFRUCTOSE H - 72
1fit_*_521fit   *     FRUFRUCTOSE F - 73
1fit_*_521fit   *     FRUFRUCTOSE H - 74
1fit_*_521fit   *     MSESELENOMETHIONINE F - 80
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER V - 63
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER A - 64
1h72_C_631h72   C     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER I - 85
1hp1_A_1921hp1   A     ZNZINC ION H - 217
1hp1_A_1921hp1   A     CO3CARBONATE ION H - 217
1jtk_A_541jtk   A     ZNZINC ION A - 54
1jtk_A_541jtk   A     THUTETRAHYDRODEOXYURIDINE A - 54
1jtk_A_541jtk   A     ZNZINC ION E - 55
1jtk_A_541jtk   A     THUTETRAHYDRODEOXYURIDINE E - 55
1jtk_A_541jtk   A     ZNZINC ION R - 56
1jtk_A_541jtk   A     THUTETRAHYDRODEOXYURIDINE V - 75
1mio_B_811mio   B     CLPFE-S CLUSTER T - 104
1nth_A_2711nth   A     BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID L - 295
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a6q_*_2641a6q   * MN2MN 2+ BINDING SITES.D - 282
1h72_C_631h72   C TRSTRS BINDING SITE FOR CHAIN CD - 73
1h72_C_631h72   C TRSTRS BINDING SITE FOR CHAIN CN - 76

Clusters included in this Subclass
CLUSTER: HE.5.17
CLUSTER: HE.6.48