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Information on SUBCLASS 3.3.1
Subclass Accession number: 8318
Subclass: 3.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 60

Average sequence ID (%) : 11.7 +/- 15.0
Average RMSD (Å) : 0.715 +/- 0.219

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XXpXXhX
(φψ)-conformation: aapaabb
Pattern: [adegknqrst]x[acfiklmtv]x[adegknqrst][dehknqrsty][dekpqrst]x[acfgiklmtv]xxx
Conservation:-0.324-1.1690.336-1.0450.6000.2871.833-0.0871.255-0.336-1.352-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4s_A_2221a4s   A226237SLLCHHPNVAKVHHHHH-TT--EEaaaaaxaaxabb
1aqu_A_1721aqu   A180191WEKSKNSRVLFMHHHTTSTTEEEEaaaaaxaabxbb
1b31_A_2461b31   A254265NACLNQAKCVGIHHHHT-TTEEEEaaaaabaaxaeb
1b7g_O_111b7g   O1829DAIIKQPDMKLVHHHHT-TTEEEEaaaaaxaabbxa
1bjn_A_2611bjn   A278287GVIDNSDFYR..HHHHH-SSEE..aaaaabaabb..
1bob_*_2311bob   -241252QSWLEDKSITEIHHHHH-TTEEEEaaaaaxaaxabb
1bxs_A_2281bxs   A230241AAISSHMDVDKVHHHHT-TT-SEEaaaaaxaababb
1c0a_A_3051c0a   A308319AGPANDPKGRVAHHHHH-TTEEEEaaaaaxaaxbbb
1cf2_O_111cf2   O1829DAIAQQDDMKVIHHHHTSSSEEEEaaaaaxaabbxa
1chu_A_1451chu   A146157SKALNHPNIRVLHHHHH-TTEEEEaaaaaxaabbbx
1cjc_A_611cjc   A6677TQTARSDRCAFYHHHHTSTTEEEEaaaaaxaabbbb
1cl1_A_2591cl1   A275286EWLAEHPQVARVHHHHT-TTEEEEaaaaaxaababb
1d2f_A_1511d2f   A155166EAVLAKPECKIMHHHHTSTTEEEEaaaaapaaxabb
1dxy_*_2791dxy   -282292DELLGMPNVVL.HHHHT-TTEEE.aaaaaxaabbx.
1ep3_A_1101ep3   A118129AKIGDAANVKAIHHHTTSTTEEEEaaaaaxaaxabb
1euh_A_2101euh   A215226DYIVEHQAVNFIHHHHH-TT--EEaaaaapaaxabb
1exp_*_2441exp   -259270QACMQVTRCQGVHHHHTSTTEEEEaaaaabaaxaeb
1f5a_A_3981f5a   A403414GSLEKNEFITLAHHHHTSTTEEEEaaaaabaababb
1feh_A_2111feh   A215226KNALNAPEKHVIHHHHH-TT-EEEaaaaaxaaxxxx
1fg7_A_2671fg7   A281292AALKEIPCVEQVHHHHHSTTEEEEaaaaaxaaxabb
1g3m_A_1711g3m   A179190WEKGKSPRVLFLHHHTTSTTEEEEaaaaaxaabxxb
1gc0_A_2621gc0   A278289EFLARQPQVELIHHHHT-TTEEEEaaaaaxaaxabb
1gc0_A_3211gc0   A327337RFMNALQLFSR.HHHHH-SSSEE.aaaaapaaxxx.
1gso_A_351gso   A3545AGTALEPALQN.HHHHHSTTEEE.aaaaaxaabbx.
1h1d_A_1771h1d   A181192AYVRGSSSFECTHHHHH-TTEEEEaaaaaxaabbbb
1hkv_A_1911hkv   A197208RRVFATDHLRLVHHHHH-SSEEEEaaaaabaabbxa
1i1w_A_2451i1w   A253264NACLNVSSCVGIHHHHH-TTEEEEaaaaabaaxaeb
1i3j_A_2261i3j   A230241TYRVKSDKWNWFHHHHH-TT--EEaaaaaxaabbbb
1i50_K_401i50   K4859AELLNDRKVLFAHHHTT-TTEEEEaaaaaxaababb
1i52_A_371i52   A4354HALLAHPRVKRVHHHHTSTTEEEEaaaaaxaaxabb
1ibj_A_3871ibj   A392402HLVETTKYFSI.HHHHH-SSSEE.aaaaapaabxx.
1j4a_A_2811j4a   A284294ADLIARPNVLV.HHHHH-TTEEE.aaaaaxaabbb.
1jsc_A_1191jsc   A123134DAIHNSDKFNFVHHHHH-TTSEEEaaaaaxaabxxx
1ju3_A_901ju3   A99110SWILEQAWCDGNHHHHHSTTEEEEaaaaaxaabavb
1jvw_A_361jvw   A5363EQKAAQPDAVK.HHHHHSTTEEE.aaaaapaaxbb.
1jz7_A_5491jz7   A554565QAFRQYPRLQGGHHHHH-TTEEEEaaaaabaaxaee
1k1x_A_2331k1x   A239249DAITSNEKINL.HHHHH-TTEEE.aaaaapaabbx.
1kdg_A_4101kdg   A412423QTALARPNFTFKHHHHT-TTEEEEaaaaaxaabbbb
1knr_A_1361knr   A146157SKALNHPNIRVLHHHHT-TTEEEEaaaaabaabbxb
1lc0_A_581lc0   A5970EDALRSQEIDVAHHHHH-SSEEEEaaaaapaaxabb
1m6y_A_2461m6y   A254264ETFRNSKKLRI.HHHHH-SSEEE.aaaaaxaabbx.
1n8p_A_3161n8p   A321331KFASSTRLFTL.HHHHH-SSSEE.aaaaaxaaxbx.
1nst_A_6171nst   A622632LFLGMHPDLSS.HHHHTSTTEEE.aaaaaxaabbx.
1o04_A_2281o04   A230241AAIASHEDVDKVHHHHT-TT--EEaaaaaxaaxabb
1o5k_A_1441o5k   A149159RIAADLKNVVG.HHHHH-TTEEE.aaaaabaaxab.
1o9j_A_2281o9j   A230241AAISSHMDVDKVHHHHT-TT--EEaaaaaxaaxabb
1od8_A_2441od8   A252263NDCLAVSRCLGIHHHHT-TTEEEEaaaaabaaxaeb
1odz_A_3921odz   A397406QAFYADEFTA..HHHHHSTTEE..aaaaaxaaxb..
1qfz_A_2491qfz   A253264WELLKKDNTFVYHHHHHSTTEEEEaaaaaxaabbbb
1qht_A_921qht   A98109DRIRAHPAVVDIHHHHTSTTEEEEaaaaaxaababb
1qsm_A_391qsm   A4657FGRFLDPNIKMWHHHHH-TTS-EEaaaaaxaababb
1rlr_*_3721rlr   -380391TKYEKDDSIRKQHHHHH-TTS-EEaaaaapaaxxbb
1scj_B_3531scj   B357368KELKKDPSVAYVHHHHTSTTEEEEaaaaaxaababb
1sft_A_1421sft   A150161ALIERHPHFVLEHHHHHSTTEEEEaaaaaxaaxbxa
1spb_P_531spb   P5768KELKKDPSVAYVHHHHH-TTEEEEaaaaaxaababb
1tgo_A_921tgo   A98109DKIKEHPAVVDIHHHHHSTTEEEEaaaaaxaaxaeb
1un7_A_2371un7   A240251GTALAHDGFVTEHHHHH-TT-EEEaaaaabaabxbx
1xyz_A_7651xyz   A781792KICLANPNCNTFHHHHH-TTEEEEaaaaabaababb
2dld_A_2812dld   A284294ADLIDRPNVLV.HHHHH-TTEEE.aaaaapaabbx.
2mas_A_132mas   A2031LLAHGNPEIELLHHHHH-TTEEEEaaaaaxaaxbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bob_*_2311bob   *     ACOACETYL COENZYME *A H - 231
1bob_*_2311bob   *     ACOACETYL COENZYME *A G - 232
1bob_*_2311bob   *     ACOACETYL COENZYME *A S - 233
1bob_*_2311bob   *     ACOACETYL COENZYME *A V - 254
1bxs_A_2281bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 229
1bxs_A_2281bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 230
1bxs_A_2281bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 233
1bxs_A_2281bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 243
1bxs_A_2281bxs   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 244
1c0a_A_3051c0a   A     AMPADENOSINE MONOPHOSPHATE V - 306
1c0a_A_3051c0a   A     AMPADENOSINE MONOPHOSPHATE F - 307
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 11
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 12
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 13
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 32
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 33
1cl1_A_2591cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 262
1d2f_A_1511d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 169
1ep3_A_1101ep3   A     FMNFLAVIN MONONUCLEOTIDE E - 130
1ep3_A_1101ep3   A     FMNFLAVIN MONONUCLEOTIDE L - 131
1ep3_A_1101ep3   A     FMNFLAVIN MONONUCLEOTIDE N - 132
1f5a_A_3981f5a   A     MSESELENOMETHIONINE T - 412
1f5a_A_3981f5a   A     MSESELENOMETHIONINE L - 413
1feh_A_2111feh   A     HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER M - 229
1fg7_A_2671fg7   A     MSESELENOMETHIONINE E - 267
1fg7_A_2671fg7   A     MSESELENOMETHIONINE R - 268
1fg7_A_2671fg7   A     MSESELENOMETHIONINE V - 269
1fg7_A_2671fg7   A     MSESELENOMETHIONINE A - 270
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL K - 173
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL K - 176
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL S - 177
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL W - 178
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL E - 180
1gc0_A_2621gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 265
1hkv_A_1911hkv   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 211
1i1w_A_2451i1w   A     GOLGLYCEROL N - 253
1i1w_A_2451i1w   A     GOLGLYCEROL A - 254
1i1w_A_2451i1w   A     GOLGLYCEROL L - 256
1i1w_A_2451i1w   A     GOLGLYCEROL N - 257
1i52_A_371i52   A     CACALCIUM ION L - 45
1i52_A_371i52   A     CACALCIUM ION L - 46
1i52_A_371i52   A     CACALCIUM ION A - 47
1i52_A_371i52   A     CACALCIUM ION H - 48
1i52_A_371i52   A     CACALCIUM ION P - 49
1i52_A_371i52   A     CACALCIUM ION V - 51
1i52_A_371i52   A     CTPCYTIDINE-5'-TRIPHOSPHATE A - 57
1jsc_A_1191jsc   A     2HPDIHYDROGENPHOSPHATE ION H - 126
1jsc_A_1191jsc   A     2HPDIHYDROGENPHOSPHATE ION N - 127
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE W - 553
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE R - 557
1kdg_A_4101kdg   A     MANALPHA-D-MANNOSE T - 421
1knr_A_1361knr   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 136
1knr_A_1361knr   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 141
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 617
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 618
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE A - 619
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 623
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 228
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 231
1o04_A_2281o04   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 233
1o04_A_2281o04   A     GAIGUANIDINE D - 239
1o5k_A_1441o5k   A     MCLNZ-(1-CARBOXYETHYL)-LYSINE G - 159
1o5k_A_1441o5k   A     CACALCIUM ION G - 159
1od8_A_2441od8   A     IMDIMIDAZOLE V - 257
1od8_A_2441od8   A     IMDIMIDAZOLE S - 258
1od8_A_2441od8   A     IMDIMIDAZOLE R - 259
1od8_A_2441od8   A     IMDIMIDAZOLE C - 260
1od8_A_2441od8   A     IMDIMIDAZOLE L - 261
1od8_A_2441od8   A     IMDIMIDAZOLE G - 262
1qfz_A_2491qfz   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C - 266
1qfz_A_2491qfz   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 267
1sft_A_1421sft   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 164
1un7_A_2371un7   A     GLPGLUCOSAMINE 6-PHOSPHATE I - 253
2mas_A_132mas   A     PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL D - 14
2mas_A_132mas   A     CACALCIUM ION D - 14
2mas_A_132mas   A     PIR2-(4-AMINO-PHENYL)-5-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL D - 15
2mas_A_132mas   A     CACALCIUM ION D - 15
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o9j_A_2281o9j   A NDANAD BINDING SITE FOR CHAIN AG - 229
1o9j_A_2281o9j   A NDANAD BINDING SITE FOR CHAIN AA - 230
1o9j_A_2281o9j   A NDANAD BINDING SITE FOR CHAIN AF - 243
1o9j_A_2281o9j   A NDANAD BINDING SITE FOR CHAIN AT - 244
1od8_A_2441od8   A AC7IMD BINDING SITE FOR CHAIN AS - 258
1od8_A_2441od8   A AC7IMD BINDING SITE FOR CHAIN AC - 260
1od8_A_2441od8   A AC7IMD BINDING SITE FOR CHAIN AL - 261
1un7_A_2371un7   A AC32PE BINDING SITE FOR CHAIN AD - 246
2mas_A_132mas   A S1DESCRIPTION NOT PROVIDEDD - 15

Clusters included in this Subclass
CLUSTER: HE.2.48
CLUSTER: HE.3.15
CLUSTER: HE.4.16
CLUSTER: HE.4.28
CLUSTER: HE.5.15
CLUSTER: HE.5.206
CLUSTER: HE.6.89