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Information on SUBCLASS 3.5.1
Subclass Accession number: 8339
Subclass: 3.5.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 62

Average sequence ID (%) : 11.9 +/- 14.3
Average RMSD (Å) : 0.624 +/- 0.227

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXchXhX
(φψ)-conformation: aalbpbb
Pattern: x[acfilmvy]xxx[degknqr]x[dehknpqrst][acfgilmpvwy]xxxx
Conservation:-0.6860.929-0.2990.743-0.7992.3060.4050.571-1.013-0.760-0.724-0.673-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b4u_B_1001b4u   B109120SLILDEFDMTIM.HHHHTT---EEE.aaaaavbxxbxx.
1b5p_A_151b5p   A2535ELRRQGVDLVA..HHHHTT---EE..aaaaavxxbxx..
1bia_*_331bia   -4253TLRDWGVDVFTV.HHHHTT---EEE.aaaaavxxbxbb.
1ccw_B_1871ccw   B203214FYEEQGVHINRE.HHHHTT---EEE.aaaaavbxbxbb.
1d3y_A_731d3y   A8897QLLETDDFST...HHHHTT--EE...aaaaalbbbx...
1dc1_A_2471dc1   A267279KFSEKGLSPKTIFHHHHTT---EEEEaaaaavbbpxbbb
1dhs_*_2201dhs   -223232WAQKNHIPVF...HHHHTT--EE...aaaaalbxbb...
1dii_A_671dii   A7687ICNEHKIPIWTI.HHHHTT--EEEE.aaaaalxwbbxb.
1dug_A_141dug   A1931LLEYLEEKYEEHLHHHHHT---EEEEaaaaavxxbbbbx
1e6b_A_181e6b   A2638ALALKGLDYEYIPHHHHTT---EEEEaaaaavxxbxxbx
1egz_A_2341egz   A243255FMRDNNISNANWAHHHHTT--EEEEEaaaaalbxbbxbw
1f05_A_1471f05   A156168LEEQHGIHCNMTLHHHHH---EEEEEaaaaavbxbbxbl
1f3a_A_161f3a   A2133LLAAAGVEFEEKFHHHHTT---EEEEaaaaavbxbbbbx
1fui_A_1171fui   A127139AHSQKGIPAFSIYHHHHTT---EEEEaaaaavbwbxbbb
1fw1_A_151fw1   A2335ALALKGIDYKTVPHHHHTT---EEEEaaaaavxxbxbbx
1g6s_A_1991g6s   A207218LMKTFGVEIENQ.HHHHTT---EEE.aaaaavbbbbxx.
1gee_A_1181gee   A130142YFVENDIKGTVINHHHHTT---EEEEaaaaalbxxbbbb
1glq_A_151glq   A2032LLADQGQSWKEEVHHHHTT---EEEEaaaaavxbbxbbx
1gnw_A_121gnw   A2032ALHEKNLDFELVHHHHHTT---EEEEaaaaalbxbbxxp
1gum_A_171gum   A2234VLAAAGVEFDEEFHHHHTT---EEEEaaaaavbxbbbbx
1hlg_A_161hlg   A1931MITYWGYPNEEYEHHHHTT---EEEEaaaaavbxbbbbb
1i52_A_1911i52   A194206ALEYCGFHPQLVEHHHHTT---EEEEaaaaavxbpxbbx
1itw_A_5211itw   A530542ARIREGKDTISVTHHHHTT---EEEEaaaaavbbbxxbb
1ivn_A_1151ivn   A128137LAKEFDVPLL...HHHHTT--EE...aaaaalbwbx...
1iyh_A_161iyh   A2133IFAYLDIQYEDHRHHHHTT---EEEEaaaaalbxbxxxb
1j09_A_1311j09   A136148ERARRGEPHVIRLHHHHTT---EEEEaaaaavxxbbbbx
1j9b_A_141j9b   A2132MIRNSGTEPTII.HHHHTT---EEE.aaaaavbxxxbb.
1ja1_A_5381ja1   A549561WLREQGKEVGETLHHHHTT-----EEaaaaavxxbxxbb
1je0_A_1321je0   A141153SFSKRNLKYYVGNHHHHTT--EEEEEaaaaalbxbbbex
1jjf_A_2331jjf   A242254YCVANNINHVYWLHHHHTT---EEEEaaaaalbxbbbbb
1jys_A_1231jys   A132144CIAELNLNAVRGLHHHHTT--EEEEEaaaaavbbbbxex
1k8q_A_161k8q   A1931MITYWGYPAEEYEHHHHTT---EEEEaaaaavxwbbxbb
1ki9_A_161ki9   A2638KLSEEGINYKMVNHHHTTT---EEEEaaaaagxbxbxbx
1l3i_A_1461l3i   A146158CLRDLGFDVNITEHHHHTT---EEEEaaaaavxxxbbbb
1l8a_A_6041l8a   A613625AAGDQQARGFLIGHHHHTT---EEEEaaaaalxbbbbbx
1luc_A_1771luc   A182192WAAERGLPMIL..HHHHTT--BEE..aaaaavxxbbx..
1lwd_A_2361lwd   A238250DFDKYKIWYEHRLHHHHTT--EEEEEaaaaalbbbbxbx
1m0u_A_621m0u   A6779LFAYGNQEYEDVRHHHHHT---EEEEaaaaalxxbxxxb
1m7g_A_381m7g   A4960LVRDRRVHAYRL.HHHHH---EEEE.aaaaavxxbbxb.
1mpy_A_751mpy   A8495DLMAYGCAVEQL.HHHHHT---EEE.aaaaagxxxbbx.
1n2a_A_121n2a   A1729TLRESGKDFTLVSHHHHTT---EEEEaaaaavxxbbxbx
1nek_A_171nek   A2536QISQSGQTCALL.HHHHTT---EEE.aaaaavbxbbbb.
1ny1_A_811ny1   A8799VLKKHRVTGTFFVHHHHTT---EEEEaaaaalbxbbbxb
1o4s_A_151o4s   A2333ALIKKGEDVIN..HHHHTT---EE..aaaaavxxxxx..
1o98_A_3171o98   A320332VLSQHGLRQLRIAHHHHTT--EEEEEaaaaavxxbbbbb
1oao_A_3161oao   A322332VLMRQGIPLVT..HHHHH---EEE..aaaaavxxbab..
1oe8_A_181oe8   A2335TLVAAGVNYEDERHHHHTT---EEEEaaaaavbxbbxbx
1ovm_A_4441ovm   A447459SMLRDKQHPIILVHHHHTT---EEEEaaaaalxbxbxbb
1pd2_1_161pd2   12133IFAYLDIKYEDHRHHHHTT---EEEEaaaaalxxbxxxb
1pfq_A_7141pfq   A722734ALVDVGVDFQAMWHHHHTT---EEEEaaaaavbxbbbbx
1pk9_A_1311pk9   A140152AAKALGIDARVGNHHHHTT--EEEEEaaaaavbxbxbbx
1pmt_*_121pmt   -1729VLRETGLDFSIERHHHHTT---EEEEaaaaalbxbbbbx
1pn9_A_101pn9   A1830TAAAVGVELNLKLHHHHTT---EEEEaaaaavxxbxxbp
1pox_A_4571pox   A459471TQVQYHLPVINVVHHHHTT---EEEEaaaaalbwbxxbb
1qgd_A_4421qgd   A447459MAALMKQRQVMVYHHHHTT---EEEEaaaaalbxbxbxb
1ukf_A_2401ukf   A250262HYNSLNYDVACVNHHHHTT--EEEEEaaaaavbpxabbx
1zpd_A_4501zpd   A452464QMVRLKLPVIIFLHHHHTT---EEEEaaaaalxwxxbxx
2gsq_*_152gsq   -2032VLAAHGEEFTDRVHHHHTT---EEEEaaaaavbxbxbxx
2gsr_A_152gsr   A2032LLADQDQSWKEEVHHHHTT---EEEEaaaaavxbbxbbx
4uag_A_154uag   A2335FFLARGVTPRVMDHHHTTT---EEEEaaaaavbxxbbbb
7a3h_A_2427a3h   A251263FMDERNLSWANWSHHHHTT--EEEEEaaaaalxxbbxxw
7aat_A_2387aat   A242254HFIEQGIDVVLSQHHHHTT---EEEEaaaaavxxxbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ccw_B_1871ccw   B     TARD(-)-TARTARIC ACID E - 214
1d3y_A_731d3y   A     MGMAGNESIUM ION T - 92
1d3y_A_731d3y   A     MGMAGNESIUM ION D - 93
1d3y_A_731d3y   A     MGMAGNESIUM ION D - 94
1dii_A_671dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 85
1dii_A_671dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 86
1dii_A_671dii   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 87
1fui_A_1171fui   A     FOCFUCITOL V - 119
1fw1_A_151fw1   A     GSHGLUTHATHIONE S - 15
1fw1_A_151fw1   A     GSHGLUTHATHIONE C - 16
1fw1_A_151fw1   A     GSHGLUTHATHIONE S - 17
1fw1_A_151fw1   A     GSHGLUTHATHIONE R - 19
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE Y - 200
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE I - 203
1g6s_A_1991g6s   A     S3PSHIKIMATE-3-PHOSPHATE T - 204
1g6s_A_1991g6s   A     FMTFORMIC ACID T - 210
1gee_A_1181gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE M - 143
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE I - 12
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE A - 13
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE T - 14
1gnw_A_121gnw   A     GTXS-HEXYLGLUTATHIONE R - 16
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE I - 16
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE S - 17
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 18
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 22
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE W - 23
1hlg_A_161hlg   A     NAGN-ACETYL-D-GLUCOSAMINE E - 29
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE T - 14
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) T - 14
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE S - 15
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) S - 15
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE R - 16
1j9b_A_141j9b   A     TASTRIHYDROXYARSENITE(III) R - 16
1j9b_A_141j9b   A     CZZTHIARSAHYDROXY-CYSTEINE N - 17
1ja1_A_5381ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 538
1ja1_A_5381ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 539
1ja1_A_5381ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 565
1ja1_A_5381ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C - 566
1l3i_A_1461l3i   A     MSESELENOMETHIONINE C - 146
1l3i_A_1461l3i   A     MSESELENOMETHIONINE L - 147
1l3i_A_1461l3i   A     MSESELENOMETHIONINE R - 148
1l3i_A_1461l3i   A     MSESELENOMETHIONINE D - 149
1l3i_A_1461l3i   A     MSESELENOMETHIONINE V - 154
1l3i_A_1461l3i   A     MSESELENOMETHIONINE N - 155
1l3i_A_1461l3i   A     MSESELENOMETHIONINE I - 156
1l3i_A_1461l3i   A     MSESELENOMETHIONINE T - 157
1l3i_A_1461l3i   A     MSESELENOMETHIONINE E - 158
1l8a_A_6041l8a   A     TDPTHIAMIN DIPHOSPHATE R - 606
1l8a_A_6041l8a   A     TDPTHIAMIN DIPHOSPHATE D - 609
1luc_A_1771luc   A     EDO1,2-ETHANEDIOL S - 178
1luc_A_1771luc   A     EDO1,2-ETHANEDIOL T - 179
1luc_A_1771luc   A     EDO1,2-ETHANEDIOL W - 182
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE K - 38
1m7g_A_381m7g   A     ADXADENOSINE-5'-PHOSPHOSULFATE K - 38
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE S - 39
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE T - 40
1m7g_A_381m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE L - 41
1nek_A_171nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 17
1nek_A_171nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 18
1nek_A_171nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 19
1nek_A_171nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 36
1ny1_A_811ny1   A     MSESELENOMETHIONINE T - 81
1ny1_A_811ny1   A     MSESELENOMETHIONINE L - 85
1ny1_A_811ny1   A     MSESELENOMETHIONINE F - 97
1ny1_A_811ny1   A     MSESELENOMETHIONINE V - 99
1oao_A_3161oao   A     XCCFE(4)-NI(1)-S(4) CLUSTER C - 316
1oao_A_3161oao   A     FE2FE (II) ION C - 316
1oao_A_3161oao   A     XCCFE(4)-NI(1)-S(4) CLUSTER C - 317
1oao_A_3161oao   A     FE2FE (II) ION C - 317
1oao_A_3161oao   A     NINICKEL (II) ION C - 317
1ovm_A_4441ovm   A     TPPTHIAMINE DIPHOSPHATE L - 460
1ovm_A_4441ovm   A     MGMAGNESIUM ION L - 460
1ovm_A_4441ovm   A     MGMAGNESIUM ION N - 461
1pn9_A_101pn9   A     GTXS-HEXYLGLUTATHIONE A - 10
1pn9_A_101pn9   A     GTXS-HEXYLGLUTATHIONE P - 11
1pn9_A_101pn9   A     GTXS-HEXYLGLUTATHIONE C - 12
1pox_A_4571pox   A     MGMAGNESIUM ION F - 472
1pox_A_4571pox   A     TPPTHIAMINE DIPHOSPHATE F - 472
1pox_A_4571pox   A     MGMAGNESIUM ION T - 473
1zpd_A_4501zpd   A     DPXMONO-{4-[(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-AMINO]-2-HYDROXY-3-MERCAPTO-PENT-3-ENYL-PHOSPHONO} ESTER I - 465
1zpd_A_4501zpd   A     MGMAGNESIUM ION I - 465
1zpd_A_4501zpd   A     MGMAGNESIUM ION N - 466
4uag_A_154uag   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE L - 15
4uag_A_154uag   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE T - 16
4uag_A_154uag   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE G - 17
4uag_A_154uag   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE M - 34
4uag_A_154uag   A     UAGURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE-D-GLUTAMATE D - 35
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 253
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 254
7aat_A_2387aat   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 255
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oao_A_3161oao   A BC7FE BINDING SITE FOR CHAIN AC - 317

Clusters included in this Subclass
CLUSTER: HE.4.184
CLUSTER: HE.4.19
CLUSTER: HE.5.21
CLUSTER: HE.5.9
CLUSTER: HE.6.21
CLUSTER: HE.6.3