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Information on SUBCLASS 3.5.4
Subclass Accession number: 8342
Subclass: 3.5.4 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 17.8 +/- 15.0
Average RMSD (Å) : 0.833 +/- 0.058

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXGXXhX
(φψ)-conformation: aalbpbb
Pattern: xxx[HIL][AK][AE][G]xx[GIL]xx[FIK]x[GR]
Conservation:-0.482-0.404-0.482-0.3260.3570.5513.263-0.482-0.560-0.795-0.170-0.298-0.717-0.0650.612
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1h3f_A_251h3f   A2943LAKLKEGRPLTVKLGHHHHHT-S--EEEEEaaaaaavbxxxbxbb
1rmg_*_1171rmg   -117131YVYHAEGTYGARILRHHHHTTT----EEEEaaaaaavbbbxxabb
1wht_B_3141wht   B318332RELIAAGLRIWVFSGHHHHHTT---EEEEEaaaaaavxxbbbbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1h3f_A_251h3f   A     TYBTYROSINAL K - 41
1h3f_A_251h3f   A     TYBTYROSINAL L - 42
1h3f_A_251h3f   A     TYBTYROSINAL G - 43
1h3f_A_251h3f   A     TYBTYROSINAL A - 44
1rmg_*_1171rmg   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 117
1rmg_*_1171rmg   *     MANALPHA-D-MANNOSE Y - 117
1rmg_*_1171rmg   *     NAGN-ACETYL-D-GLUCOSAMINE V - 118
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h3f_A_251h3f   A AC6TYB BINDING SITE FOR CHAIN AK - 41
1h3f_A_251h3f   A AC6TYB BINDING SITE FOR CHAIN AG - 43

Clusters included in this Subclass
CLUSTER: HE.6.102