Information on SUBCLASS 3.5.4 |
Subclass Accession number: 8342
Subclass: 3.5.4 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 17.8 +/- 15.0 Average RMSD (Å) : 0.833 +/- 0.058 Consensus geometry
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Consensus Sequence: | XXGXXhX |
(φψ)-conformation: | aalbpbb |
Pattern: | x | x | x | [HIL] | [AK] | [AE] | [G] | x | x | [GIL] | x | x | [FIK] | x | [GR] |
Conservation: | -0.482 | -0.404 | -0.482 | -0.326 | 0.357 | 0.551 | 3.263 | -0.482 | -0.560 | -0.795 | -0.170 | -0.298 | -0.717 | -0.065 | 0.612 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1h3f_A_25 | 1h3f | A | 29 | 43 | LAKLKEGRPLTVKLG | HHHHHT-S--EEEEE | aaaaaavbxxxbxbb |
1rmg_*_117 | 1rmg | - | 117 | 131 | YVYHAEGTYGARILR | HHHHTTT----EEEE | aaaaaavbbbxxabb |
1wht_B_314 | 1wht | B | 318 | 332 | RELIAAGLRIWVFSG | HHHHHTT---EEEEE | aaaaaavxxbbbbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h3f_A_25 | 1h3f | A | TYBTYROSINAL | K - 41 |
1h3f_A_25 | 1h3f | A | TYBTYROSINAL | L - 42 |
1h3f_A_25 | 1h3f | A | TYBTYROSINAL | G - 43 |
1h3f_A_25 | 1h3f | A | TYBTYROSINAL | A - 44 |
1rmg_*_117 | 1rmg | * | NAGN-ACETYL-D-GLUCOSAMINE | Y - 117 |
1rmg_*_117 | 1rmg | * | MANALPHA-D-MANNOSE | Y - 117 |
1rmg_*_117 | 1rmg | * | NAGN-ACETYL-D-GLUCOSAMINE | V - 118 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h3f_A_25 | 1h3f | A | AC6TYB BINDING SITE FOR CHAIN A | K - 41 |
1h3f_A_25 | 1h3f | A | AC6TYB BINDING SITE FOR CHAIN A | G - 43 |
Clusters included in this Subclass |
CLUSTER: HE.6.102 |